miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 185051 0.66 0.986399
Target:  5'- cUCGgcgacCAACAccgGCGcCGGCGacguGGUCUCa -3'
miRNA:   3'- -AGCa----GUUGU---UGCuGCCGCg---CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 179428 0.74 0.719231
Target:  5'- gCGUCAGCGGC-ACGGUGCuGcGUCUCa -3'
miRNA:   3'- aGCAGUUGUUGcUGCCGCG-C-CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 178584 0.67 0.97656
Target:  5'- -gGUCugcACGACGACGGCcCgGGUCUg- -3'
miRNA:   3'- agCAGu--UGUUGCUGCCGcG-CCAGAga -5'
30245 5' -54.4 NC_006273.1 + 178529 0.66 0.986399
Target:  5'- aUCGcgUGGCGGCGGCGGUgguaGCGGcagccUCUCUu -3'
miRNA:   3'- -AGCa-GUUGUUGCUGCCG----CGCC-----AGAGA- -5'
30245 5' -54.4 NC_006273.1 + 173627 0.67 0.97632
Target:  5'- cUCGgCAACGcacccacgaaggcGCGACGGCgcucGCGGUCa-- -3'
miRNA:   3'- -AGCaGUUGU-------------UGCUGCCG----CGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 169973 0.74 0.709537
Target:  5'- gCGUCGAC-ACGGCaGGUGCGGaugUCUCg -3'
miRNA:   3'- aGCAGUUGuUGCUG-CCGCGCC---AGAGa -5'
30245 5' -54.4 NC_006273.1 + 167651 0.66 0.978855
Target:  5'- cUGUgAGCGGCGgcgcaACGGCGgGGUCg-- -3'
miRNA:   3'- aGCAgUUGUUGC-----UGCCGCgCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 167323 0.67 0.97656
Target:  5'- gCGgCGGCAGCGGCGGCcacgGCGGcgCUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCG----CGCCa-GAga -5'
30245 5' -54.4 NC_006273.1 + 167246 0.71 0.851461
Target:  5'- -gGUCGAuCAugGGCGGCGUGGUg--- -3'
miRNA:   3'- agCAGUU-GUugCUGCCGCGCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 166506 0.66 0.98294
Target:  5'- uUUGUCGugG-CGGCGGCaGCGGUg--- -3'
miRNA:   3'- -AGCAGUugUuGCUGCCG-CGCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 165637 0.68 0.942887
Target:  5'- aCG-CAGCAcgguGCcGCGGCcCGGUCUCUg -3'
miRNA:   3'- aGCaGUUGU----UGcUGCCGcGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 165285 0.67 0.97656
Target:  5'- cCGUCAucCAGCG-CGGCGCuGUgUCc -3'
miRNA:   3'- aGCAGUu-GUUGCuGCCGCGcCAgAGa -5'
30245 5' -54.4 NC_006273.1 + 164458 0.66 0.978855
Target:  5'- cCGcUCGAUGACGAuguCGGCGCGGcggCUgCUg -3'
miRNA:   3'- aGC-AGUUGUUGCU---GCCGCGCCa--GA-GA- -5'
30245 5' -54.4 NC_006273.1 + 163073 0.69 0.917926
Target:  5'- cCGaggCGGCGGCGACGGCGgCGG-CUg- -3'
miRNA:   3'- aGCa--GUUGUUGCUGCCGC-GCCaGAga -5'
30245 5' -54.4 NC_006273.1 + 162798 0.69 0.938347
Target:  5'- gUGUCAcCAACGGCaGcCGCGGUCg-- -3'
miRNA:   3'- aGCAGUuGUUGCUGcC-GCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 161885 0.67 0.97632
Target:  5'- gCGUgGACGGCGAUGGCaaGGUgcugcacCUCa -3'
miRNA:   3'- aGCAgUUGUUGCUGCCGcgCCA-------GAGa -5'
30245 5' -54.4 NC_006273.1 + 158239 0.66 0.978855
Target:  5'- gCGUCGGcCGGCGACGGCgguucgccGUGGUUg-- -3'
miRNA:   3'- aGCAGUU-GUUGCUGCCG--------CGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 157289 0.67 0.968582
Target:  5'- cUGUUgagaAACAGCGGCGGCGgUGGUgaCUg -3'
miRNA:   3'- aGCAG----UUGUUGCUGCCGC-GCCAgaGA- -5'
30245 5' -54.4 NC_006273.1 + 156907 0.66 0.981783
Target:  5'- ---cCGACAACGGugauucuguaaccacCGGCGUGGUUUCc -3'
miRNA:   3'- agcaGUUGUUGCU---------------GCCGCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 156444 0.67 0.968582
Target:  5'- -aGUCGACGGCGuCGcuccGUGCGGUCg-- -3'
miRNA:   3'- agCAGUUGUUGCuGC----CGCGCCAGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.