miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 156085 0.7 0.899619
Target:  5'- aUCGgucgCGACAugcuagaGCGcACGGCGCGGUUcaUCa -3'
miRNA:   3'- -AGCa---GUUGU-------UGC-UGCCGCGCCAG--AGa -5'
30245 5' -54.4 NC_006273.1 + 153850 0.67 0.97656
Target:  5'- aUCGUCAu---CGACGaGUGCGGcCUUa -3'
miRNA:   3'- -AGCAGUuguuGCUGC-CGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 153593 0.69 0.917926
Target:  5'- gCGgCGGCGugacCGGCGGUGCGGUCg-- -3'
miRNA:   3'- aGCaGUUGUu---GCUGCCGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 151251 0.69 0.938347
Target:  5'- cUCGUCugccgugaucaAGCGGCG-CGGCGCGGaccUUUCa -3'
miRNA:   3'- -AGCAG-----------UUGUUGCuGCCGCGCC---AGAGa -5'
30245 5' -54.4 NC_006273.1 + 149441 0.69 0.933581
Target:  5'- ---aCGGCAACGGCGGCGcCGGUg--- -3'
miRNA:   3'- agcaGUUGUUGCUGCCGC-GCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 148778 0.67 0.971429
Target:  5'- cCGagGcCGGCGGCGGCGCcgugcGUCUCa -3'
miRNA:   3'- aGCagUuGUUGCUGCCGCGc----CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 147420 0.67 0.971429
Target:  5'- gCGUCGgcGCGGCGucCGGCgucgggggugGCGGUCUUc -3'
miRNA:   3'- aGCAGU--UGUUGCu-GCCG----------CGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 145121 0.74 0.699781
Target:  5'- aCGUCuACAACGACGcGCGCaaGGUgCUCa -3'
miRNA:   3'- aGCAGuUGUUGCUGC-CGCG--CCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 144123 0.66 0.984744
Target:  5'- uUUGUU----ACGACGGCGgGGUgCUCa -3'
miRNA:   3'- -AGCAGuuguUGCUGCCGCgCCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 142288 0.7 0.880581
Target:  5'- aCGUCGuguggGCGGCGugGaCGCGGUgCUCg -3'
miRNA:   3'- aGCAGU-----UGUUGCugCcGCGCCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 142057 0.66 0.986399
Target:  5'- gUCGUCucgcGGCAGCGccgccaGCGGCGaCGGUUa-- -3'
miRNA:   3'- -AGCAG----UUGUUGC------UGCCGC-GCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 140115 0.66 0.986399
Target:  5'- aCGUCGggaauaaaaccGCGggggaaaagaACGGCGGUG-GGUCUCg -3'
miRNA:   3'- aGCAGU-----------UGU----------UGCUGCCGCgCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 139849 0.72 0.819334
Target:  5'- -aGUCGACAcgccggguGgGACGGuCGUGGUCUCc -3'
miRNA:   3'- agCAGUUGU--------UgCUGCC-GCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 134469 0.7 0.912255
Target:  5'- gCGUCuGCAGCG-CGGCGCcGcCUCg -3'
miRNA:   3'- aGCAGuUGUUGCuGCCGCGcCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 133425 0.66 0.98294
Target:  5'- cCGUCaAGCGacGCGACGGCGCGcG-Ca-- -3'
miRNA:   3'- aGCAG-UUGU--UGCUGCCGCGC-CaGaga -5'
30245 5' -54.4 NC_006273.1 + 133198 0.69 0.938347
Target:  5'- gCGUUAu---CGACGcCGCGGUCUCa -3'
miRNA:   3'- aGCAGUuguuGCUGCcGCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 132799 0.7 0.900243
Target:  5'- gCGUCAACGACGGCGGCagcacCGGcCcCa -3'
miRNA:   3'- aGCAGUUGUUGCUGCCGc----GCCaGaGa -5'
30245 5' -54.4 NC_006273.1 + 131620 0.66 0.981783
Target:  5'- aCGUCAACGugGgcugguucaaaGCGGCuacggccauugugccGCGcGUCUCg -3'
miRNA:   3'- aGCAGUUGUugC-----------UGCCG---------------CGC-CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 123092 0.68 0.9513
Target:  5'- -gGUCGGCuGGCGccuCGGUGCGGUCg-- -3'
miRNA:   3'- agCAGUUG-UUGCu--GCCGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 118015 0.71 0.854515
Target:  5'- aCGUCAAUAGCGACGGUggaaguggcgggcacGCGGgUUCc -3'
miRNA:   3'- aGCAGUUGUUGCUGCCG---------------CGCCaGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.