Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 149441 | 0.69 | 0.933581 |
Target: 5'- ---aCGGCAACGGCGGCGcCGGUg--- -3' miRNA: 3'- agcaGUUGUUGCUGCCGC-GCCAgaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 7754 | 0.69 | 0.923371 |
Target: 5'- gCGUCcgaaGGCGAgGAUGGCaUGGUCUCg -3' miRNA: 3'- aGCAG----UUGUUgCUGCCGcGCCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 94945 | 0.73 | 0.775612 |
Target: 5'- -gGUCGACcGCGACGGCuuccgGGUCUCg -3' miRNA: 3'- agCAGUUGuUGCUGCCGcg---CCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 84707 | 0.73 | 0.765549 |
Target: 5'- uUCGUCGcgggccaaauccaGCAGCGAUgaGGCGCgucguGGUCUCUu -3' miRNA: 3'- -AGCAGU-------------UGUUGCUG--CCGCG-----CCAGAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 33244 | 0.74 | 0.738399 |
Target: 5'- cCGgggCGGCGACGACGGCG-GGUC-Cg -3' miRNA: 3'- aGCa--GUUGUUGCUGCCGCgCCAGaGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 63174 | 0.74 | 0.738399 |
Target: 5'- cCGUCucGCGGCGcggcCGGCGCGGcCUCg -3' miRNA: 3'- aGCAGu-UGUUGCu---GCCGCGCCaGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 87515 | 0.74 | 0.737448 |
Target: 5'- aUGUCGGaguuugcCAGCG-CGGCgGCGGUCUCUg -3' miRNA: 3'- aGCAGUU-------GUUGCuGCCG-CGCCAGAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 21546 | 0.74 | 0.732682 |
Target: 5'- gCGuuUCGAgGACGGCGGCGCGGcgcagcggcugagccUCUCg -3' miRNA: 3'- aGC--AGUUgUUGCUGCCGCGCC---------------AGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 169973 | 0.74 | 0.709537 |
Target: 5'- gCGUCGAC-ACGGCaGGUGCGGaugUCUCg -3' miRNA: 3'- aGCAGUUGuUGCUG-CCGCGCC---AGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 188051 | 0.76 | 0.590664 |
Target: 5'- aUGaCAGCGcCGGCGGCGCGgGUCUCg -3' miRNA: 3'- aGCaGUUGUuGCUGCCGCGC-CAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 113741 | 0.72 | 0.827626 |
Target: 5'- gUGgCGACGGCGGCGGCGCcGUgCUCa -3' miRNA: 3'- aGCaGUUGUUGCUGCCGCGcCA-GAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 34187 | 0.71 | 0.843696 |
Target: 5'- gCGUgGAaaaaAACGGCGGCGCGGUg--- -3' miRNA: 3'- aGCAgUUg---UUGCUGCCGCGCCAgaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 163073 | 0.69 | 0.917926 |
Target: 5'- cCGaggCGGCGGCGACGGCGgCGG-CUg- -3' miRNA: 3'- aGCa--GUUGUUGCUGCCGC-GCCaGAga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 132799 | 0.7 | 0.900243 |
Target: 5'- gCGUCAACGACGGCGGCagcacCGGcCcCa -3' miRNA: 3'- aGCAGUUGUUGCUGCCGc----GCCaGaGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 76838 | 0.7 | 0.88735 |
Target: 5'- -aGUCGACuucGCGACGuGUGUGG-CUCUg -3' miRNA: 3'- agCAGUUGu--UGCUGC-CGCGCCaGAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 142288 | 0.7 | 0.880581 |
Target: 5'- aCGUCGuguggGCGGCGugGaCGCGGUgCUCg -3' miRNA: 3'- aGCAGU-----UGUUGCugCcGCGCCA-GAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 63510 | 0.71 | 0.866421 |
Target: 5'- uUCGUCAagcACAuCGACGcCGCGGUUUUUa -3' miRNA: 3'- -AGCAGU---UGUuGCUGCcGCGCCAGAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 118015 | 0.71 | 0.854515 |
Target: 5'- aCGUCAAUAGCGACGGUggaaguggcgggcacGCGGgUUCc -3' miRNA: 3'- aGCAGUUGUUGCUGCCG---------------CGCCaGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 167246 | 0.71 | 0.851461 |
Target: 5'- -gGUCGAuCAugGGCGGCGUGGUg--- -3' miRNA: 3'- agCAGUU-GUugCUGCCGCGCCAgaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 197075 | 0.71 | 0.849151 |
Target: 5'- gCGgCAGCAGCGGCGGCGCcgacggugauggugGGUC-Cg -3' miRNA: 3'- aGCaGUUGUUGCUGCCGCG--------------CCAGaGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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