Results 61 - 80 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 7754 | 0.69 | 0.923371 |
Target: 5'- gCGUCcgaaGGCGAgGAUGGCaUGGUCUCg -3' miRNA: 3'- aGCAG----UUGUUgCUGCCGcGCCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 149441 | 0.69 | 0.933581 |
Target: 5'- ---aCGGCAACGGCGGCGcCGGUg--- -3' miRNA: 3'- agcaGUUGUUGCUGCCGC-GCCAgaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 51499 | 0.69 | 0.933581 |
Target: 5'- cCGgCGGCAACGGCGGCGacgaGGacaacucgcUCUCg -3' miRNA: 3'- aGCaGUUGUUGCUGCCGCg---CC---------AGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 60279 | 0.69 | 0.933581 |
Target: 5'- gCGUCAACGACagcacaGACGGCGUGccGUCg-- -3' miRNA: 3'- aGCAGUUGUUG------CUGCCGCGC--CAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 117661 | 0.71 | 0.873603 |
Target: 5'- aCGgauGCAAaGACGGCGCGGgCUCg -3' miRNA: 3'- aGCaguUGUUgCUGCCGCGCCaGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 156085 | 0.7 | 0.899619 |
Target: 5'- aUCGgucgCGACAugcuagaGCGcACGGCGCGGUUcaUCa -3' miRNA: 3'- -AGCa---GUUGU-------UGC-UGCCGCGCCAG--AGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 196974 | 0.7 | 0.91051 |
Target: 5'- cUCGUCGcuguugccgccaccGCAGCGGCGGCGaCGGa---- -3' miRNA: 3'- -AGCAGU--------------UGUUGCUGCCGC-GCCagaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 52576 | 0.7 | 0.912255 |
Target: 5'- aCGUguuccCAGCAGgGAcCGuGUGCGGUCUCUu -3' miRNA: 3'- aGCA-----GUUGUUgCU-GC-CGCGCCAGAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 134469 | 0.7 | 0.912255 |
Target: 5'- gCGUCuGCAGCG-CGGCGCcGcCUCg -3' miRNA: 3'- aGCAGuUGUUGCuGCCGCGcCaGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 197062 | 0.7 | 0.912255 |
Target: 5'- aCGguggCGGCGACGAcaCGGCGaCGGUCa-- -3' miRNA: 3'- aGCa---GUUGUUGCU--GCCGC-GCCAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 199374 | 0.7 | 0.912255 |
Target: 5'- --uUCAGCAGCaucUGGCGCGGUCUg- -3' miRNA: 3'- agcAGUUGUUGcu-GCCGCGCCAGAga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 2182 | 0.71 | 0.849151 |
Target: 5'- gCGgCAGCAGCGGCGGCGCcgacggugauggugGGUC-Cg -3' miRNA: 3'- aGCaGUUGUUGCUGCCGCG--------------CCAGaGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 117455 | 0.71 | 0.842909 |
Target: 5'- uUCGUCcgaggacGACGACGACGccgcCGCGGUUUCc -3' miRNA: 3'- -AGCAG-------UUGUUGCUGCc---GCGCCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 197185 | 0.72 | 0.835748 |
Target: 5'- cCGUCuccggaugAGCGGCcGCGGCGCGGgCUCg -3' miRNA: 3'- aGCAG--------UUGUUGcUGCCGCGCCaGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 139849 | 0.72 | 0.819334 |
Target: 5'- -aGUCGACAcgccggguGgGACGGuCGUGGUCUCc -3' miRNA: 3'- agCAGUUGU--------UgCUGCC-GCGCCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 94376 | 0.73 | 0.775612 |
Target: 5'- aCGUCGguaACAGCcGCGGCGCaGUCUUg -3' miRNA: 3'- aGCAGU---UGUUGcUGCCGCGcCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 38636 | 0.73 | 0.76647 |
Target: 5'- cCGUCAGCAGCGACgcggGGUGCGG-Cg-- -3' miRNA: 3'- aGCAGUUGUUGCUG----CCGCGCCaGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 179428 | 0.74 | 0.719231 |
Target: 5'- gCGUCAGCGGC-ACGGUGCuGcGUCUCa -3' miRNA: 3'- aGCAGUUGUUGcUGCCGCG-C-CAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 145121 | 0.74 | 0.699781 |
Target: 5'- aCGUCuACAACGACGcGCGCaaGGUgCUCa -3' miRNA: 3'- aGCAGuUGUUGCUGC-CGCG--CCA-GAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 178529 | 0.66 | 0.986399 |
Target: 5'- aUCGcgUGGCGGCGGCGGUgguaGCGGcagccUCUCUu -3' miRNA: 3'- -AGCa-GUUGUUGCUGCCG----CGCC-----AGAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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