Results 101 - 118 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 38636 | 0.73 | 0.76647 |
Target: 5'- cCGUCAGCAGCGACgcggGGUGCGG-Cg-- -3' miRNA: 3'- aGCAGUUGUUGCUG----CCGCGCCaGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 179428 | 0.74 | 0.719231 |
Target: 5'- gCGUCAGCGGC-ACGGUGCuGcGUCUCa -3' miRNA: 3'- aGCAGUUGUUGcUGCCGCG-C-CAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 145121 | 0.74 | 0.699781 |
Target: 5'- aCGUCuACAACGACGcGCGCaaGGUgCUCa -3' miRNA: 3'- aGCAGuUGUUGCUGC-CGCG--CCA-GAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 52576 | 0.7 | 0.912255 |
Target: 5'- aCGUguuccCAGCAGgGAcCGuGUGCGGUCUCUu -3' miRNA: 3'- aGCA-----GUUGUUgCU-GC-CGCGCCAGAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 134469 | 0.7 | 0.912255 |
Target: 5'- gCGUCuGCAGCG-CGGCGCcGcCUCg -3' miRNA: 3'- aGCAGuUGUUGCuGCCGCGcCaGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 197062 | 0.7 | 0.912255 |
Target: 5'- aCGguggCGGCGACGAcaCGGCGaCGGUCa-- -3' miRNA: 3'- aGCa---GUUGUUGCU--GCCGC-GCCAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 87699 | 0.68 | 0.942887 |
Target: 5'- gCGgugguGCAGCGGCGGCugaGCGGUCa-- -3' miRNA: 3'- aGCagu--UGUUGCUGCCG---CGCCAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 97753 | 0.69 | 0.938347 |
Target: 5'- aUCGUCGAacggcaAGCGACGGCccgauacucGCGGUgUUUc -3' miRNA: 3'- -AGCAGUUg-----UUGCUGCCG---------CGCCAgAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 162798 | 0.69 | 0.938347 |
Target: 5'- gUGUCAcCAACGGCaGcCGCGGUCg-- -3' miRNA: 3'- aGCAGUuGUUGCUGcC-GCGCCAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 49988 | 0.69 | 0.938347 |
Target: 5'- aCGUCGGCcGCGACGGCGaGGg---- -3' miRNA: 3'- aGCAGUUGuUGCUGCCGCgCCagaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 22995 | 0.69 | 0.938347 |
Target: 5'- gCGgacGCAuCGACGGCGUGaGUCUCc -3' miRNA: 3'- aGCaguUGUuGCUGCCGCGC-CAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 133198 | 0.69 | 0.938347 |
Target: 5'- gCGUUAu---CGACGcCGCGGUCUCa -3' miRNA: 3'- aGCAGUuguuGCUGCcGCGCCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 203092 | 0.69 | 0.933581 |
Target: 5'- gUCG-CGGCGgucGCGACGGUGaCGGUCcCg -3' miRNA: 3'- -AGCaGUUGU---UGCUGCCGC-GCCAGaGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 105841 | 0.69 | 0.920131 |
Target: 5'- gCGUCA-CAGCcgaGGCGGCGCGGcgcagcgccggccauUCUCc -3' miRNA: 3'- aGCAGUuGUUG---CUGCCGCGCC---------------AGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 153593 | 0.69 | 0.917926 |
Target: 5'- gCGgCGGCGugacCGGCGGUGCGGUCg-- -3' miRNA: 3'- aGCaGUUGUu---GCUGCCGCGCCAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 111700 | 0.7 | 0.912255 |
Target: 5'- aUCGUgAAC-GCGGCauucuauGCGUGGUCUCUa -3' miRNA: 3'- -AGCAgUUGuUGCUGc------CGCGCCAGAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 199374 | 0.7 | 0.912255 |
Target: 5'- --uUCAGCAGCaucUGGCGCGGUCUg- -3' miRNA: 3'- agcAGUUGUUGcu-GCCGCGCCAGAga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 36500 | 0.78 | 0.522384 |
Target: 5'- gUGUUGcCGACGGCGGCGCGGUCcgUCg -3' miRNA: 3'- aGCAGUuGUUGCUGCCGCGCCAG--AGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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