miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 36500 0.78 0.522384
Target:  5'- gUGUUGcCGACGGCGGCGCGGUCcgUCg -3'
miRNA:   3'- aGCAGUuGUUGCUGCCGCGCCAG--AGa -5'
30245 5' -54.4 NC_006273.1 + 153593 0.69 0.917926
Target:  5'- gCGgCGGCGugacCGGCGGUGCGGUCg-- -3'
miRNA:   3'- aGCaGUUGUu---GCUGCCGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 203092 0.69 0.933581
Target:  5'- gUCG-CGGCGgucGCGACGGUGaCGGUCcCg -3'
miRNA:   3'- -AGCaGUUGU---UGCUGCCGC-GCCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 178529 0.66 0.986399
Target:  5'- aUCGcgUGGCGGCGGCGGUgguaGCGGcagccUCUCUu -3'
miRNA:   3'- -AGCa-GUUGUUGCUGCCG----CGCC-----AGAGA- -5'
30245 5' -54.4 NC_006273.1 + 94376 0.73 0.775612
Target:  5'- aCGUCGguaACAGCcGCGGCGCaGUCUUg -3'
miRNA:   3'- aGCAGU---UGUUGcUGCCGCGcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 139849 0.72 0.819334
Target:  5'- -aGUCGACAcgccggguGgGACGGuCGUGGUCUCc -3'
miRNA:   3'- agCAGUUGU--------UgCUGCC-GCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 117455 0.71 0.842909
Target:  5'- uUCGUCcgaggacGACGACGACGccgcCGCGGUUUCc -3'
miRNA:   3'- -AGCAG-------UUGUUGCUGCc---GCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 2182 0.71 0.849151
Target:  5'- gCGgCAGCAGCGGCGGCGCcgacggugauggugGGUC-Cg -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCG--------------CCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 196974 0.7 0.91051
Target:  5'- cUCGUCGcuguugccgccaccGCAGCGGCGGCGaCGGa---- -3'
miRNA:   3'- -AGCAGU--------------UGUUGCUGCCGC-GCCagaga -5'
30245 5' -54.4 NC_006273.1 + 111700 0.7 0.912255
Target:  5'- aUCGUgAAC-GCGGCauucuauGCGUGGUCUCUa -3'
miRNA:   3'- -AGCAgUUGuUGCUGc------CGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 134469 0.7 0.912255
Target:  5'- gCGUCuGCAGCG-CGGCGCcGcCUCg -3'
miRNA:   3'- aGCAGuUGUUGCuGCCGCGcCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 156085 0.7 0.899619
Target:  5'- aUCGgucgCGACAugcuagaGCGcACGGCGCGGUUcaUCa -3'
miRNA:   3'- -AGCa---GUUGU-------UGC-UGCCGCGCCAG--AGa -5'
30245 5' -54.4 NC_006273.1 + 145121 0.74 0.699781
Target:  5'- aCGUCuACAACGACGcGCGCaaGGUgCUCa -3'
miRNA:   3'- aGCAGuUGUUGCUGC-CGCG--CCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 197062 0.7 0.912255
Target:  5'- aCGguggCGGCGACGAcaCGGCGaCGGUCa-- -3'
miRNA:   3'- aGCa---GUUGUUGCU--GCCGC-GCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 179428 0.74 0.719231
Target:  5'- gCGUCAGCGGC-ACGGUGCuGcGUCUCa -3'
miRNA:   3'- aGCAGUUGUUGcUGCCGCG-C-CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 117661 0.71 0.873603
Target:  5'- aCGgauGCAAaGACGGCGCGGgCUCg -3'
miRNA:   3'- aGCaguUGUUgCUGCCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 199374 0.7 0.912255
Target:  5'- --uUCAGCAGCaucUGGCGCGGUCUg- -3'
miRNA:   3'- agcAGUUGUUGcu-GCCGCGCCAGAga -5'
30245 5' -54.4 NC_006273.1 + 105841 0.69 0.920131
Target:  5'- gCGUCA-CAGCcgaGGCGGCGCGGcgcagcgccggccauUCUCc -3'
miRNA:   3'- aGCAGUuGUUG---CUGCCGCGCC---------------AGAGa -5'
30245 5' -54.4 NC_006273.1 + 38636 0.73 0.76647
Target:  5'- cCGUCAGCAGCGACgcggGGUGCGG-Cg-- -3'
miRNA:   3'- aGCAGUUGUUGCUG----CCGCGCCaGaga -5'
30245 5' -54.4 NC_006273.1 + 197185 0.72 0.835748
Target:  5'- cCGUCuccggaugAGCGGCcGCGGCGCGGgCUCg -3'
miRNA:   3'- aGCAG--------UUGUUGcUGCCGCGCCaGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.