miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 145121 0.74 0.699781
Target:  5'- aCGUCuACAACGACGcGCGCaaGGUgCUCa -3'
miRNA:   3'- aGCAGuUGUUGCUGC-CGCG--CCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 36500 0.78 0.522384
Target:  5'- gUGUUGcCGACGGCGGCGCGGUCcgUCg -3'
miRNA:   3'- aGCAGUuGUUGCUGCCGCGCCAG--AGa -5'
30245 5' -54.4 NC_006273.1 + 133425 0.66 0.98294
Target:  5'- cCGUCaAGCGacGCGACGGCGCGcG-Ca-- -3'
miRNA:   3'- aGCAG-UUGU--UGCUGCCGCGC-CaGaga -5'
30245 5' -54.4 NC_006273.1 + 47376 0.68 0.9513
Target:  5'- aCGaUAGCAACGACGaCGCGGUUg-- -3'
miRNA:   3'- aGCaGUUGUUGCUGCcGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 178584 0.67 0.97656
Target:  5'- -gGUCugcACGACGACGGCcCgGGUCUg- -3'
miRNA:   3'- agCAGu--UGUUGCUGCCGcG-CCAGAga -5'
30245 5' -54.4 NC_006273.1 + 114446 0.67 0.974087
Target:  5'- gCGUCAcCGGCGGCGGCGCcauGG-Cg-- -3'
miRNA:   3'- aGCAGUuGUUGCUGCCGCG---CCaGaga -5'
30245 5' -54.4 NC_006273.1 + 21704 0.67 0.968582
Target:  5'- cCGUCGccGCAGgccuuUGuCGGCGCGG-CUCUu -3'
miRNA:   3'- aGCAGU--UGUU-----GCuGCCGCGCCaGAGA- -5'
30245 5' -54.4 NC_006273.1 + 38073 0.68 0.942887
Target:  5'- cUCGggCAGCAGCcGCcGCGCGGcCUCg -3'
miRNA:   3'- -AGCa-GUUGUUGcUGcCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 49988 0.69 0.938347
Target:  5'- aCGUCGGCcGCGACGGCGaGGg---- -3'
miRNA:   3'- aGCAGUUGuUGCUGCCGCgCCagaga -5'
30245 5' -54.4 NC_006273.1 + 203092 0.69 0.933581
Target:  5'- gUCG-CGGCGgucGCGACGGUGaCGGUCcCg -3'
miRNA:   3'- -AGCaGUUGU---UGCUGCCGC-GCCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 197062 0.7 0.912255
Target:  5'- aCGguggCGGCGACGAcaCGGCGaCGGUCa-- -3'
miRNA:   3'- aGCa---GUUGUUGCU--GCCGC-GCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 196974 0.7 0.91051
Target:  5'- cUCGUCGcuguugccgccaccGCAGCGGCGGCGaCGGa---- -3'
miRNA:   3'- -AGCAGU--------------UGUUGCUGCCGC-GCCagaga -5'
30245 5' -54.4 NC_006273.1 + 117455 0.71 0.842909
Target:  5'- uUCGUCcgaggacGACGACGACGccgcCGCGGUUUCc -3'
miRNA:   3'- -AGCAG-------UUGUUGCUGCc---GCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 94376 0.73 0.775612
Target:  5'- aCGUCGguaACAGCcGCGGCGCaGUCUUg -3'
miRNA:   3'- aGCAGU---UGUUGcUGCCGCGcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 140115 0.66 0.986399
Target:  5'- aCGUCGggaauaaaaccGCGggggaaaagaACGGCGGUG-GGUCUCg -3'
miRNA:   3'- aGCAGU-----------UGU----------UGCUGCCGCgCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 46128 0.66 0.984744
Target:  5'- cCGUCuccAACGACGACGGCaaCGGUggCg -3'
miRNA:   3'- aGCAG---UUGUUGCUGCCGc-GCCAgaGa -5'
30245 5' -54.4 NC_006273.1 + 115478 0.66 0.98368
Target:  5'- gCGUCGGCAuAUGAagGGCGCGGgcggccaguacggcCUCUg -3'
miRNA:   3'- aGCAGUUGU-UGCUg-CCGCGCCa-------------GAGA- -5'
30245 5' -54.4 NC_006273.1 + 27384 0.68 0.957764
Target:  5'- uUCGUCAGCAGCGACGccgacaagaccucaGCaUGG-CUCg -3'
miRNA:   3'- -AGCAGUUGUUGCUGC--------------CGcGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 63510 0.71 0.866421
Target:  5'- uUCGUCAagcACAuCGACGcCGCGGUUUUUa -3'
miRNA:   3'- -AGCAGU---UGUuGCUGCcGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 209265 0.68 0.958841
Target:  5'- gUCGggaccgCAGCGccCGGCGGCGUauccgcaaGGUCUCg -3'
miRNA:   3'- -AGCa-----GUUGUu-GCUGCCGCG--------CCAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.