miRNA display CGI


Results 61 - 80 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 166506 0.66 0.98294
Target:  5'- uUUGUCGugG-CGGCGGCaGCGGUg--- -3'
miRNA:   3'- -AGCAGUugUuGCUGCCG-CGCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 105762 0.68 0.955178
Target:  5'- -gGUCAGgGAUGACGGgGaGGUUUCg -3'
miRNA:   3'- agCAGUUgUUGCUGCCgCgCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 195897 0.68 0.955178
Target:  5'- aCGUCAACAGCGGgcacUGGUGCGaGUgCUg- -3'
miRNA:   3'- aGCAGUUGUUGCU----GCCGCGC-CA-GAga -5'
30245 5' -54.4 NC_006273.1 + 27384 0.68 0.957764
Target:  5'- uUCGUCAGCAGCGACGccgacaagaccucaGCaUGG-CUCg -3'
miRNA:   3'- -AGCAGUUGUUGCUGC--------------CGcGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 167323 0.67 0.97656
Target:  5'- gCGgCGGCAGCGGCGGCcacgGCGGcgCUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCG----CGCCa-GAga -5'
30245 5' -54.4 NC_006273.1 + 161885 0.67 0.97632
Target:  5'- gCGUgGACGGCGAUGGCaaGGUgcugcacCUCa -3'
miRNA:   3'- aGCAgUUGUUGCUGCCGcgCCA-------GAGa -5'
30245 5' -54.4 NC_006273.1 + 153850 0.67 0.97656
Target:  5'- aUCGUCAu---CGACGaGUGCGGcCUUa -3'
miRNA:   3'- -AGCAGUuguuGCUGC-CGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 165285 0.67 0.97656
Target:  5'- cCGUCAucCAGCG-CGGCGCuGUgUCc -3'
miRNA:   3'- aGCAGUu-GUUGCuGCCGCGcCAgAGa -5'
30245 5' -54.4 NC_006273.1 + 167246 0.71 0.851461
Target:  5'- -gGUCGAuCAugGGCGGCGUGGUg--- -3'
miRNA:   3'- agCAGUU-GUugCUGCCGCGCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 131620 0.66 0.981783
Target:  5'- aCGUCAACGugGgcugguucaaaGCGGCuacggccauugugccGCGcGUCUCg -3'
miRNA:   3'- aGCAGUUGUugC-----------UGCCG---------------CGC-CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 123092 0.68 0.9513
Target:  5'- -gGUCGGCuGGCGccuCGGUGCGGUCg-- -3'
miRNA:   3'- agCAGUUG-UUGCu--GCCGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 115478 0.66 0.98368
Target:  5'- gCGUCGGCAuAUGAagGGCGCGGgcggccaguacggcCUCUg -3'
miRNA:   3'- aGCAGUUGU-UGCUg-CCGCGCCa-------------GAGA- -5'
30245 5' -54.4 NC_006273.1 + 46128 0.66 0.984744
Target:  5'- cCGUCuccAACGACGACGGCaaCGGUggCg -3'
miRNA:   3'- aGCAG---UUGUUGCUGCCGc-GCCAgaGa -5'
30245 5' -54.4 NC_006273.1 + 140115 0.66 0.986399
Target:  5'- aCGUCGggaauaaaaccGCGggggaaaagaACGGCGGUG-GGUCUCg -3'
miRNA:   3'- aGCAGU-----------UGU----------UGCUGCCGCgCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 167651 0.66 0.978855
Target:  5'- cUGUgAGCGGCGgcgcaACGGCGgGGUCg-- -3'
miRNA:   3'- aGCAgUUGUUGC-----UGCCGCgCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 185051 0.66 0.986399
Target:  5'- cUCGgcgacCAACAccgGCGcCGGCGacguGGUCUCa -3'
miRNA:   3'- -AGCa----GUUGU---UGCuGCCGCg---CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 231958 0.66 0.986399
Target:  5'- aCG-CAACAACGACGGgGgGGg---- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCgCgCCagaga -5'
30245 5' -54.4 NC_006273.1 + 32596 0.66 0.978633
Target:  5'- gCGUCAcACggUGACGcagcagcGCGCGG-CUCa -3'
miRNA:   3'- aGCAGU-UGuuGCUGC-------CGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 63510 0.71 0.866421
Target:  5'- uUCGUCAagcACAuCGACGcCGCGGUUUUUa -3'
miRNA:   3'- -AGCAGU---UGUuGCUGCcGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 118015 0.71 0.854515
Target:  5'- aCGUCAAUAGCGACGGUggaaguggcgggcacGCGGgUUCc -3'
miRNA:   3'- aGCAGUUGUUGCUGCCG---------------CGCCaGAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.