Results 81 - 100 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 77108 | 0.67 | 0.968582 |
Target: 5'- gCGUCAACggUGaACGGCGCuacGUCg-- -3' miRNA: 3'- aGCAGUUGuuGC-UGCCGCGc--CAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 153850 | 0.67 | 0.97656 |
Target: 5'- aUCGUCAu---CGACGaGUGCGGcCUUa -3' miRNA: 3'- -AGCAGUuguuGCUGC-CGCGCCaGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 165285 | 0.67 | 0.97656 |
Target: 5'- cCGUCAucCAGCG-CGGCGCuGUgUCc -3' miRNA: 3'- aGCAGUu-GUUGCuGCCGCGcCAgAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 32596 | 0.66 | 0.978633 |
Target: 5'- gCGUCAcACggUGACGcagcagcGCGCGG-CUCa -3' miRNA: 3'- aGCAGU-UGuuGCUGC-------CGCGCCaGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 167651 | 0.66 | 0.978855 |
Target: 5'- cUGUgAGCGGCGgcgcaACGGCGgGGUCg-- -3' miRNA: 3'- aGCAgUUGUUGC-----UGCCGCgCCAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 38257 | 0.66 | 0.980979 |
Target: 5'- cCGgCAACGACGGCGGUgGCGG-Cg-- -3' miRNA: 3'- aGCaGUUGUUGCUGCCG-CGCCaGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 131620 | 0.66 | 0.981783 |
Target: 5'- aCGUCAACGugGgcugguucaaaGCGGCuacggccauugugccGCGcGUCUCg -3' miRNA: 3'- aGCAGUUGUugC-----------UGCCG---------------CGC-CAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 166506 | 0.66 | 0.98294 |
Target: 5'- uUUGUCGugG-CGGCGGCaGCGGUg--- -3' miRNA: 3'- -AGCAGUugUuGCUGCCG-CGCCAgaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 115478 | 0.66 | 0.98368 |
Target: 5'- gCGUCGGCAuAUGAagGGCGCGGgcggccaguacggcCUCUg -3' miRNA: 3'- aGCAGUUGU-UGCUg-CCGCGCCa-------------GAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 79429 | 0.67 | 0.97656 |
Target: 5'- cUUGUCgAGCAGCauACGGCGCacggGGUCUUg -3' miRNA: 3'- -AGCAG-UUGUUGc-UGCCGCG----CCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 167323 | 0.67 | 0.97656 |
Target: 5'- gCGgCGGCAGCGGCGGCcacgGCGGcgCUg- -3' miRNA: 3'- aGCaGUUGUUGCUGCCG----CGCCa-GAga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 161885 | 0.67 | 0.97632 |
Target: 5'- gCGUgGACGGCGAUGGCaaGGUgcugcacCUCa -3' miRNA: 3'- aGCAgUUGUUGCUGCCGcgCCA-------GAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 98694 | 0.67 | 0.968582 |
Target: 5'- gCGgCGGCGGCGAcCGGC-CGGUCgUCg -3' miRNA: 3'- aGCaGUUGUUGCU-GCCGcGCCAG-AGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 62042 | 0.67 | 0.971429 |
Target: 5'- gCGgCGGCAccGCGGCGGCGgCGGaCUUg -3' miRNA: 3'- aGCaGUUGU--UGCUGCCGC-GCCaGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 116083 | 0.67 | 0.971429 |
Target: 5'- gCGUCuuGCGACuaagcACGGCGUGGUC-Cg -3' miRNA: 3'- aGCAGu-UGUUGc----UGCCGCGCCAGaGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 64981 | 0.67 | 0.971429 |
Target: 5'- cCGUCAACucguUGGCGcGCGCcguGGUCUUc -3' miRNA: 3'- aGCAGUUGuu--GCUGC-CGCG---CCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 148778 | 0.67 | 0.971429 |
Target: 5'- cCGagGcCGGCGGCGGCGCcgugcGUCUCa -3' miRNA: 3'- aGCagUuGUUGCUGCCGCGc----CAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 214846 | 0.67 | 0.973829 |
Target: 5'- gCGUUAgccuccugcgccuGCAugG-UGGCGaCGGUCUCg -3' miRNA: 3'- aGCAGU-------------UGUugCuGCCGC-GCCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 222977 | 0.67 | 0.974087 |
Target: 5'- -gGUUAGCAGCGGCGuGCGCaucugCUCg -3' miRNA: 3'- agCAGUUGUUGCUGC-CGCGcca--GAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 936 | 0.67 | 0.974087 |
Target: 5'- uUCGg-GGCGGCGACGGCGuuGUUUUc -3' miRNA: 3'- -AGCagUUGUUGCUGCCGCgcCAGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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