miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30246 3' -57.4 NC_006273.1 + 124041 0.66 0.932814
Target:  5'- aGGAGACUGUCguCGUCGguacUGGcGAc- -3'
miRNA:   3'- gCCUCUGGCAGguGCGGCa---ACC-CUuu -5'
30246 3' -57.4 NC_006273.1 + 67724 0.66 0.932814
Target:  5'- aCGGcGGCCGaCCcCGCCGUUGcGGc-- -3'
miRNA:   3'- -GCCuCUGGCaGGuGCGGCAAC-CCuuu -5'
30246 3' -57.4 NC_006273.1 + 139963 0.66 0.932814
Target:  5'- aCGGGGACgugCGUUCGUGCCG--GGGAAAa -3'
miRNA:   3'- -GCCUCUG---GCAGGUGCGGCaaCCCUUU- -5'
30246 3' -57.4 NC_006273.1 + 131026 0.66 0.917804
Target:  5'- gGGAGACUGacgCCACGCCGccauuugacuuuacGGGGc- -3'
miRNA:   3'- gCCUCUGGCa--GGUGCGGCaa------------CCCUuu -5'
30246 3' -57.4 NC_006273.1 + 197138 0.66 0.911624
Target:  5'- uCGGGGACCGUgccgcgcgCCAUGCUGgUGGuGGu- -3'
miRNA:   3'- -GCCUCUGGCA--------GGUGCGGCaACC-CUuu -5'
30246 3' -57.4 NC_006273.1 + 166860 0.66 0.911624
Target:  5'- aCGGAuGCaGUCCagaACGCgGUUGGGAu- -3'
miRNA:   3'- -GCCUcUGgCAGG---UGCGgCAACCCUuu -5'
30246 3' -57.4 NC_006273.1 + 2245 0.66 0.911624
Target:  5'- uCGGGGACCGUgccgcgcgCCAUGCUGgUGGuGGu- -3'
miRNA:   3'- -GCCUCUGGCA--------GGUGCGGCaACC-CUuu -5'
30246 3' -57.4 NC_006273.1 + 183067 0.66 0.911624
Target:  5'- gGGGGACUGaUCCAgGCgucggCGUUGGGcAAGg -3'
miRNA:   3'- gCCUCUGGC-AGGUgCG-----GCAACCC-UUU- -5'
30246 3' -57.4 NC_006273.1 + 157575 0.66 0.911624
Target:  5'- --aGGACuCGcUCACGUCGUUGGGAAu -3'
miRNA:   3'- gccUCUG-GCaGGUGCGGCAACCCUUu -5'
30246 3' -57.4 NC_006273.1 + 1265 0.67 0.905777
Target:  5'- aCGGGGGCCuUUCGCGgCGgacacgGGGAAc -3'
miRNA:   3'- -GCCUCUGGcAGGUGCgGCaa----CCCUUu -5'
30246 3' -57.4 NC_006273.1 + 41203 0.67 0.905777
Target:  5'- aCGGGGGCCuUUCGCGgCGgacacgGGGAAc -3'
miRNA:   3'- -GCCUCUGGcAGGUGCgGCaa----CCCUUu -5'
30246 3' -57.4 NC_006273.1 + 99174 0.67 0.899712
Target:  5'- aGGGGGCCGUCauuaACGgaaaCCGUguaUGGGGu- -3'
miRNA:   3'- gCCUCUGGCAGg---UGC----GGCA---ACCCUuu -5'
30246 3' -57.4 NC_006273.1 + 182624 0.67 0.899712
Target:  5'- uGGuGGCCGcgUCUugGCCGaggccgGGGAGGa -3'
miRNA:   3'- gCCuCUGGC--AGGugCGGCaa----CCCUUU- -5'
30246 3' -57.4 NC_006273.1 + 17021 0.67 0.89597
Target:  5'- aGGcGACCGuuUCCGCGCCGaaaugcuaaauaacUGGGAu- -3'
miRNA:   3'- gCCuCUGGC--AGGUGCGGCa-------------ACCCUuu -5'
30246 3' -57.4 NC_006273.1 + 111325 0.67 0.89597
Target:  5'- gGGAGGCCuGgccgcauagcgcggCCGCGCCGcUGGGu-- -3'
miRNA:   3'- gCCUCUGG-Ca-------------GGUGCGGCaACCCuuu -5'
30246 3' -57.4 NC_006273.1 + 194487 0.67 0.893433
Target:  5'- aCGGuGA-CGUCgACGCCGguucaGGGAAGg -3'
miRNA:   3'- -GCCuCUgGCAGgUGCGGCaa---CCCUUU- -5'
30246 3' -57.4 NC_006273.1 + 229902 0.67 0.886942
Target:  5'- gGGAGuACC-UCCuCGCCGUcaccGGGAAAc -3'
miRNA:   3'- gCCUC-UGGcAGGuGCGGCAa---CCCUUU- -5'
30246 3' -57.4 NC_006273.1 + 111516 0.67 0.872638
Target:  5'- aGGGGACaCGcgaguaagCCAUGCCGUccgggugUGGGGAc -3'
miRNA:   3'- gCCUCUG-GCa-------GGUGCGGCA-------ACCCUUu -5'
30246 3' -57.4 NC_006273.1 + 194138 0.67 0.872638
Target:  5'- uCGGAGGCCGUCgacuccaCGCGCCGc-GGuGAc- -3'
miRNA:   3'- -GCCUCUGGCAG-------GUGCGGCaaCC-CUuu -5'
30246 3' -57.4 NC_006273.1 + 117202 0.68 0.869101
Target:  5'- uCGGgcgacagccgcagucAGGCCG-CCACGCCGgcggcUGGGGc- -3'
miRNA:   3'- -GCC---------------UCUGGCaGGUGCGGCa----ACCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.