Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30246 | 3' | -57.4 | NC_006273.1 | + | 41203 | 0.67 | 0.905777 |
Target: 5'- aCGGGGGCCuUUCGCGgCGgacacgGGGAAc -3' miRNA: 3'- -GCCUCUGGcAGGUGCgGCaa----CCCUUu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 2245 | 0.66 | 0.911624 |
Target: 5'- uCGGGGACCGUgccgcgcgCCAUGCUGgUGGuGGu- -3' miRNA: 3'- -GCCUCUGGCA--------GGUGCGGCaACC-CUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 183067 | 0.66 | 0.911624 |
Target: 5'- gGGGGACUGaUCCAgGCgucggCGUUGGGcAAGg -3' miRNA: 3'- gCCUCUGGC-AGGUgCG-----GCAACCC-UUU- -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 157575 | 0.66 | 0.911624 |
Target: 5'- --aGGACuCGcUCACGUCGUUGGGAAu -3' miRNA: 3'- gccUCUG-GCaGGUGCGGCAACCCUUu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 166860 | 0.66 | 0.911624 |
Target: 5'- aCGGAuGCaGUCCagaACGCgGUUGGGAu- -3' miRNA: 3'- -GCCUcUGgCAGG---UGCGgCAACCCUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 197138 | 0.66 | 0.911624 |
Target: 5'- uCGGGGACCGUgccgcgcgCCAUGCUGgUGGuGGu- -3' miRNA: 3'- -GCCUCUGGCA--------GGUGCGGCaACC-CUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 131026 | 0.66 | 0.917804 |
Target: 5'- gGGAGACUGacgCCACGCCGccauuugacuuuacGGGGc- -3' miRNA: 3'- gCCUCUGGCa--GGUGCGGCaa------------CCCUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 124041 | 0.66 | 0.932814 |
Target: 5'- aGGAGACUGUCguCGUCGguacUGGcGAc- -3' miRNA: 3'- gCCUCUGGCAGguGCGGCa---ACC-CUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 67724 | 0.66 | 0.932814 |
Target: 5'- aCGGcGGCCGaCCcCGCCGUUGcGGc-- -3' miRNA: 3'- -GCCuCUGGCaGGuGCGGCAAC-CCuuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 139963 | 0.66 | 0.932814 |
Target: 5'- aCGGGGACgugCGUUCGUGCCG--GGGAAAa -3' miRNA: 3'- -GCCUCUG---GCAGGUGCGGCaaCCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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