Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 17021 | 0.67 | 0.89597 |
|
Target: 5'- aGGcGACCGuuUCCGCGCCGaaaugcuaaauaacUGGGAu- -3' miRNA: 3'- gCCuCUGGC--AGGUGCGGCa-------------ACCCUuu -5' |
|||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 194487 | 0.67 | 0.893433 |
|
Target: 5'- aCGGuGA-CGUCgACGCCGguucaGGGAAGg -3' miRNA: 3'- -GCCuCUgGCAGgUGCGGCaa---CCCUUU- -5' |
|||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 194138 | 0.67 | 0.872638 |
|
Target: 5'- uCGGAGGCCGUCgacuccaCGCGCCGc-GGuGAc- -3' miRNA: 3'- -GCCUCUGGCAG-------GUGCGGCaaCC-CUuu -5' |
|||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 83345 | 0.68 | 0.866236 |
|
Target: 5'- gGuGGGACCcggCgGCGCCGUggUGGGAGGa -3' miRNA: 3'- gC-CUCUGGca-GgUGCGGCA--ACCCUUU- -5' |
|||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 14198 | 0.68 | 0.85145 |
|
Target: 5'- uCGGAGcACUuUCCGCGgCGcUUGGGAGc -3' miRNA: 3'- -GCCUC-UGGcAGGUGCgGC-AACCCUUu -5' |
|||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 14601 | 0.69 | 0.794246 |
|
Target: 5'- cCGcGAG-CCGcUgACGCCGUUGGGAu- -3' miRNA: 3'- -GC-CUCuGGCaGgUGCGGCAACCCUuu -5' |
|||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 44783 | 0.69 | 0.794246 |
|
Target: 5'- aGGAGAUCG-CCGCGgCCGaUGGGc-- -3' miRNA: 3'- gCCUCUGGCaGGUGC-GGCaACCCuuu -5' |
|||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 69994 | 0.7 | 0.776573 |
|
Target: 5'- cCGGAGGCCGccaacUCCGUGCUGUUGGa--- -3' miRNA: 3'- -GCCUCUGGC-----AGGUGCGGCAACCcuuu -5' |
|||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 71049 | 0.7 | 0.749187 |
|
Target: 5'- cCGGAGGCUGUCagaGCGCC---GGGAGc -3' miRNA: 3'- -GCCUCUGGCAGg--UGCGGcaaCCCUUu -5' |
|||||||
| 30246 | 3' | -57.4 | NC_006273.1 | + | 139963 | 0.66 | 0.932814 |
|
Target: 5'- aCGGGGACgugCGUUCGUGCCG--GGGAAAa -3' miRNA: 3'- -GCCUCUG---GCAGGUGCGGCaaCCCUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home