Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30246 | 3' | -57.4 | NC_006273.1 | + | 194487 | 0.67 | 0.893433 |
Target: 5'- aCGGuGA-CGUCgACGCCGguucaGGGAAGg -3' miRNA: 3'- -GCCuCUgGCAGgUGCGGCaa---CCCUUU- -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 83345 | 0.68 | 0.866236 |
Target: 5'- gGuGGGACCcggCgGCGCCGUggUGGGAGGa -3' miRNA: 3'- gC-CUCUGGca-GgUGCGGCA--ACCCUUU- -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 14198 | 0.68 | 0.85145 |
Target: 5'- uCGGAGcACUuUCCGCGgCGcUUGGGAGc -3' miRNA: 3'- -GCCUC-UGGcAGGUGCgGC-AACCCUUu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 14601 | 0.69 | 0.794246 |
Target: 5'- cCGcGAG-CCGcUgACGCCGUUGGGAu- -3' miRNA: 3'- -GC-CUCuGGCaGgUGCGGCAACCCUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 44783 | 0.69 | 0.794246 |
Target: 5'- aGGAGAUCG-CCGCGgCCGaUGGGc-- -3' miRNA: 3'- gCCUCUGGCaGGUGC-GGCaACCCuuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 69994 | 0.7 | 0.776573 |
Target: 5'- cCGGAGGCCGccaacUCCGUGCUGUUGGa--- -3' miRNA: 3'- -GCCUCUGGC-----AGGUGCGGCAACCcuuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 71049 | 0.7 | 0.749187 |
Target: 5'- cCGGAGGCUGUCagaGCGCC---GGGAGc -3' miRNA: 3'- -GCCUCUGGCAGg--UGCGGcaaCCCUUu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 67724 | 0.66 | 0.932814 |
Target: 5'- aCGGcGGCCGaCCcCGCCGUUGcGGc-- -3' miRNA: 3'- -GCCuCUGGCaGGuGCGGCAAC-CCuuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 157575 | 0.66 | 0.911624 |
Target: 5'- --aGGACuCGcUCACGUCGUUGGGAAu -3' miRNA: 3'- gccUCUG-GCaGGUGCGGCAACCCUUu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 2245 | 0.66 | 0.911624 |
Target: 5'- uCGGGGACCGUgccgcgcgCCAUGCUGgUGGuGGu- -3' miRNA: 3'- -GCCUCUGGCA--------GGUGCGGCaACC-CUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 17021 | 0.67 | 0.89597 |
Target: 5'- aGGcGACCGuuUCCGCGCCGaaaugcuaaauaacUGGGAu- -3' miRNA: 3'- gCCuCUGGC--AGGUGCGGCa-------------ACCCUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 139963 | 0.66 | 0.932814 |
Target: 5'- aCGGGGACgugCGUUCGUGCCG--GGGAAAa -3' miRNA: 3'- -GCCUCUG---GCAGGUGCGGCaaCCCUUU- -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 182624 | 0.67 | 0.899712 |
Target: 5'- uGGuGGCCGcgUCUugGCCGaggccgGGGAGGa -3' miRNA: 3'- gCCuCUGGC--AGGugCGGCaa----CCCUUU- -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 183067 | 0.66 | 0.911624 |
Target: 5'- gGGGGACUGaUCCAgGCgucggCGUUGGGcAAGg -3' miRNA: 3'- gCCUCUGGC-AGGUgCG-----GCAACCC-UUU- -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 194138 | 0.67 | 0.872638 |
Target: 5'- uCGGAGGCCGUCgacuccaCGCGCCGc-GGuGAc- -3' miRNA: 3'- -GCCUCUGGCAG-------GUGCGGCaaCC-CUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 41203 | 0.67 | 0.905777 |
Target: 5'- aCGGGGGCCuUUCGCGgCGgacacgGGGAAc -3' miRNA: 3'- -GCCUCUGGcAGGUGCgGCaa----CCCUUu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 229902 | 0.67 | 0.886942 |
Target: 5'- gGGAGuACC-UCCuCGCCGUcaccGGGAAAc -3' miRNA: 3'- gCCUC-UGGcAGGuGCGGCAa---CCCUUU- -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 124041 | 0.66 | 0.932814 |
Target: 5'- aGGAGACUGUCguCGUCGguacUGGcGAc- -3' miRNA: 3'- gCCUCUGGCAGguGCGGCa---ACC-CUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 131026 | 0.66 | 0.917804 |
Target: 5'- gGGAGACUGacgCCACGCCGccauuugacuuuacGGGGc- -3' miRNA: 3'- gCCUCUGGCa--GGUGCGGCaa------------CCCUuu -5' |
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30246 | 3' | -57.4 | NC_006273.1 | + | 166860 | 0.66 | 0.911624 |
Target: 5'- aCGGAuGCaGUCCagaACGCgGUUGGGAu- -3' miRNA: 3'- -GCCUcUGgCAGG---UGCGgCAACCCUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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