miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30246 5' -59.9 NC_006273.1 + 170566 0.66 0.860506
Target:  5'- gGCCgaaCCGCGACUCcaggcgGCGCGgcaCUUCg -3'
miRNA:   3'- aCGGag-GGCGCUGGG------CGUGCa--GAAGa -5'
30246 5' -59.9 NC_006273.1 + 18063 0.66 0.860506
Target:  5'- gGCCgcuaUCCCGCaGAUuuaCGCACGUUcUCUg -3'
miRNA:   3'- aCGG----AGGGCG-CUGg--GCGUGCAGaAGA- -5'
30246 5' -59.9 NC_006273.1 + 129171 0.66 0.853183
Target:  5'- gGCCaCCCGCGgcACCUGUACGUg---- -3'
miRNA:   3'- aCGGaGGGCGC--UGGGCGUGCAgaaga -5'
30246 5' -59.9 NC_006273.1 + 152016 0.66 0.853183
Target:  5'- aGCCcgaCGUGGCCCGCGgGUCcUCc -3'
miRNA:   3'- aCGGaggGCGCUGGGCGUgCAGaAGa -5'
30246 5' -59.9 NC_006273.1 + 129249 0.66 0.845681
Target:  5'- cGCCg-CCGCGGCcaagCCGCugGUCa--- -3'
miRNA:   3'- aCGGagGGCGCUG----GGCGugCAGaaga -5'
30246 5' -59.9 NC_006273.1 + 101945 0.66 0.830162
Target:  5'- aGCgaaaaUCCCGCGugCgCGCGcCGUCgcgUCg -3'
miRNA:   3'- aCGg----AGGGCGCugG-GCGU-GCAGa--AGa -5'
30246 5' -59.9 NC_006273.1 + 202119 0.66 0.830162
Target:  5'- cGCCgcaaggcCCCGCuggaacucgGACCCGC-CGUCgUCg -3'
miRNA:   3'- aCGGa------GGGCG---------CUGGGCGuGCAGaAGa -5'
30246 5' -59.9 NC_006273.1 + 91295 0.66 0.822157
Target:  5'- aGCCag-CGCGGCCaCGCGCGUCa--- -3'
miRNA:   3'- aCGGaggGCGCUGG-GCGUGCAGaaga -5'
30246 5' -59.9 NC_006273.1 + 195185 0.66 0.822157
Target:  5'- gUGCCccggggCCCGCGACUccucccuugCGCccGCGUCUugUCUg -3'
miRNA:   3'- -ACGGa-----GGGCGCUGG---------GCG--UGCAGA--AGA- -5'
30246 5' -59.9 NC_006273.1 + 235123 0.66 0.822157
Target:  5'- gUGCCccggggCCCGCGACUccucccuugCGCccGCGUCUugUCUg -3'
miRNA:   3'- -ACGGa-----GGGCGCUGG---------GCG--UGCAGA--AGA- -5'
30246 5' -59.9 NC_006273.1 + 28341 0.66 0.822157
Target:  5'- cGCCgaCCCGgGACCCugauGCugGUCa--- -3'
miRNA:   3'- aCGGa-GGGCgCUGGG----CGugCAGaaga -5'
30246 5' -59.9 NC_006273.1 + 292 0.66 0.822157
Target:  5'- gUGCCccggggCCCGCGACUccucccuugCGCccGCGUCUugUCUg -3'
miRNA:   3'- -ACGGa-----GGGCGCUGG---------GCG--UGCAGA--AGA- -5'
30246 5' -59.9 NC_006273.1 + 39122 0.67 0.813998
Target:  5'- cGCgUCCCGCGGCgacagcugaCGCAgGUCcgUCg -3'
miRNA:   3'- aCGgAGGGCGCUGg--------GCGUgCAGa-AGa -5'
30246 5' -59.9 NC_006273.1 + 55590 0.67 0.813998
Target:  5'- aGCUaCCgagGCGACCCcCugGUCUUCa -3'
miRNA:   3'- aCGGaGGg--CGCUGGGcGugCAGAAGa -5'
30246 5' -59.9 NC_006273.1 + 5670 0.67 0.813998
Target:  5'- gGUaggCCCGCGagaagGCUCGCACgGUCUUCc -3'
miRNA:   3'- aCGga-GGGCGC-----UGGGCGUG-CAGAAGa -5'
30246 5' -59.9 NC_006273.1 + 234015 0.67 0.813998
Target:  5'- cGCgUCCCGCGGCgacagcugaCGCAgGUCcgUCg -3'
miRNA:   3'- aCGgAGGGCGCUGg--------GCGUgCAGa-AGa -5'
30246 5' -59.9 NC_006273.1 + 31991 0.67 0.797244
Target:  5'- cGCUgUUgCGCGACCCGCGCGcCa--- -3'
miRNA:   3'- aCGG-AGgGCGCUGGGCGUGCaGaaga -5'
30246 5' -59.9 NC_006273.1 + 72969 0.67 0.788662
Target:  5'- cGCCUCCCGCucGGCCUGC-CGa----- -3'
miRNA:   3'- aCGGAGGGCG--CUGGGCGuGCagaaga -5'
30246 5' -59.9 NC_006273.1 + 194356 0.67 0.788662
Target:  5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3'
miRNA:   3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5'
30246 5' -59.9 NC_006273.1 + 234294 0.67 0.788662
Target:  5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3'
miRNA:   3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.