Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 30246 | 5' | -59.9 | NC_006273.1 | + | 87833 | 0.71 | 0.591116 |
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Target: 5'- cGCugCUCCCGcCGACgCCGCcagccuCGUCUUCg -3' miRNA: 3'- aCG--GAGGGC-GCUG-GGCGu-----GCAGAAGa -5' |
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| 30246 | 5' | -59.9 | NC_006273.1 | + | 66163 | 0.72 | 0.534052 |
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Target: 5'- cGUCUgCCUGCGACCCGUagacuuucaGCGUCUg-- -3' miRNA: 3'- aCGGA-GGGCGCUGGGCG---------UGCAGAaga -5' |
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| 30246 | 5' | -59.9 | NC_006273.1 | + | 131412 | 0.72 | 0.534052 |
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Target: 5'- cGCCUCCauggGCGAgUUCGCGCGUCUgCUa -3' miRNA: 3'- aCGGAGGg---CGCU-GGGCGUGCAGAaGA- -5' |
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| 30246 | 5' | -59.9 | NC_006273.1 | + | 141452 | 0.73 | 0.443126 |
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Target: 5'- cGCCUCCCGCGgguccugGCCCGCGCa------ -3' miRNA: 3'- aCGGAGGGCGC-------UGGGCGUGcagaaga -5' |
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| 30246 | 5' | -59.9 | NC_006273.1 | + | 187897 | 0.77 | 0.293008 |
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Target: 5'- gGCCUCgCGCGGCUCGC-CGUCgUUCUc -3' miRNA: 3'- aCGGAGgGCGCUGGGCGuGCAG-AAGA- -5' |
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| 30246 | 5' | -59.9 | NC_006273.1 | + | 232840 | 0.77 | 0.293008 |
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Target: 5'- aGCCUCgCCGCGGCCCGgACGUag-Ca -3' miRNA: 3'- aCGGAG-GGCGCUGGGCgUGCAgaaGa -5' |
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| 30246 | 5' | -59.9 | NC_006273.1 | + | 228240 | 1.08 | 0.00259 |
|
Target: 5'- gUGCCUCCCGCGACCCGCACGUCUUCUa -3' miRNA: 3'- -ACGGAGGGCGCUGGGCGUGCAGAAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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