miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30246 5' -59.9 NC_006273.1 + 228240 1.08 0.00259
Target:  5'- gUGCCUCCCGCGACCCGCACGUCUUCUa -3'
miRNA:   3'- -ACGGAGGGCGCUGGGCGUGCAGAAGA- -5'
30246 5' -59.9 NC_006273.1 + 232840 0.77 0.293008
Target:  5'- aGCCUCgCCGCGGCCCGgACGUag-Ca -3'
miRNA:   3'- aCGGAG-GGCGCUGGGCgUGCAgaaGa -5'
30246 5' -59.9 NC_006273.1 + 187897 0.77 0.293008
Target:  5'- gGCCUCgCGCGGCUCGC-CGUCgUUCUc -3'
miRNA:   3'- aCGGAGgGCGCUGGGCGuGCAG-AAGA- -5'
30246 5' -59.9 NC_006273.1 + 141452 0.73 0.443126
Target:  5'- cGCCUCCCGCGgguccugGCCCGCGCa------ -3'
miRNA:   3'- aCGGAGGGCGC-------UGGGCGUGcagaaga -5'
30246 5' -59.9 NC_006273.1 + 66163 0.72 0.534052
Target:  5'- cGUCUgCCUGCGACCCGUagacuuucaGCGUCUg-- -3'
miRNA:   3'- aCGGA-GGGCGCUGGGCG---------UGCAGAaga -5'
30246 5' -59.9 NC_006273.1 + 131412 0.72 0.534052
Target:  5'- cGCCUCCauggGCGAgUUCGCGCGUCUgCUa -3'
miRNA:   3'- aCGGAGGg---CGCU-GGGCGUGCAGAaGA- -5'
30246 5' -59.9 NC_006273.1 + 197474 0.71 0.556686
Target:  5'- cGCCUCCCGCucacaacgcgugcgaGACCUGCGCGa----- -3'
miRNA:   3'- aCGGAGGGCG---------------CUGGGCGUGCagaaga -5'
30246 5' -59.9 NC_006273.1 + 214851 0.71 0.571929
Target:  5'- aGCCUCCUGCG-CCUGCAUGguggCgacggUCUc -3'
miRNA:   3'- aCGGAGGGCGCuGGGCGUGCa---Ga----AGA- -5'
30246 5' -59.9 NC_006273.1 + 87833 0.71 0.591116
Target:  5'- cGCugCUCCCGcCGACgCCGCcagccuCGUCUUCg -3'
miRNA:   3'- aCG--GAGGGC-GCUG-GGCGu-----GCAGAAGa -5'
30246 5' -59.9 NC_006273.1 + 47872 0.7 0.604614
Target:  5'- cGCCgUCCUGUGACCgaCGCggcuucuucgucgccGCGUCUUCg -3'
miRNA:   3'- aCGG-AGGGCGCUGG--GCG---------------UGCAGAAGa -5'
30246 5' -59.9 NC_006273.1 + 129682 0.7 0.600753
Target:  5'- cUGUCgUCCGCGACCCGUuaACGUCg--- -3'
miRNA:   3'- -ACGGaGGGCGCUGGGCG--UGCAGaaga -5'
30246 5' -59.9 NC_006273.1 + 23331 0.7 0.648154
Target:  5'- gGCCUgggcgcccccaccCCCGCGACCCucGCGCGgagUCa -3'
miRNA:   3'- aCGGA-------------GGGCGCUGGG--CGUGCagaAGa -5'
30246 5' -59.9 NC_006273.1 + 77180 0.69 0.678051
Target:  5'- cGCCUCaCGCugcacGACCUGCACGacaUCUUCc -3'
miRNA:   3'- aCGGAGgGCG-----CUGGGCGUGC---AGAAGa -5'
30246 5' -59.9 NC_006273.1 + 132195 0.69 0.668432
Target:  5'- aGCCUCUuuccgCGCGACCUGCucCGUCa--- -3'
miRNA:   3'- aCGGAGG-----GCGCUGGGCGu-GCAGaaga -5'
30246 5' -59.9 NC_006273.1 + 213380 0.69 0.658786
Target:  5'- gGCCaccgaUCCCGCGGCCagcaGCcCGaUCUUCg -3'
miRNA:   3'- aCGG-----AGGGCGCUGGg---CGuGC-AGAAGa -5'
30246 5' -59.9 NC_006273.1 + 96998 0.69 0.687637
Target:  5'- cGUCUCCCaguGUGACCUGCGCcgcgGUCUUa- -3'
miRNA:   3'- aCGGAGGG---CGCUGGGCGUG----CAGAAga -5'
30246 5' -59.9 NC_006273.1 + 210063 0.69 0.68668
Target:  5'- cGCgUCCCuGCGACUCacaucuaGCuCGUCUUCUg -3'
miRNA:   3'- aCGgAGGG-CGCUGGG-------CGuGCAGAAGA- -5'
30246 5' -59.9 NC_006273.1 + 68817 0.69 0.706677
Target:  5'- cGCguagCCgGCGGCgCCGCGCGUCaUCa -3'
miRNA:   3'- aCGga--GGgCGCUG-GGCGUGCAGaAGa -5'
30246 5' -59.9 NC_006273.1 + 61906 0.69 0.706677
Target:  5'- cGCUUCCUGCGACaCCaGCACGaCggCg -3'
miRNA:   3'- aCGGAGGGCGCUG-GG-CGUGCaGaaGa -5'
30246 5' -59.9 NC_006273.1 + 118763 0.69 0.706677
Target:  5'- aUGUCUgCCGCGGuaCGCACGUCgccgUCc -3'
miRNA:   3'- -ACGGAgGGCGCUggGCGUGCAGa---AGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.