Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30246 | 5' | -59.9 | NC_006273.1 | + | 170566 | 0.66 | 0.860506 |
Target: 5'- gGCCgaaCCGCGACUCcaggcgGCGCGgcaCUUCg -3' miRNA: 3'- aCGGag-GGCGCUGGG------CGUGCa--GAAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 18063 | 0.66 | 0.860506 |
Target: 5'- gGCCgcuaUCCCGCaGAUuuaCGCACGUUcUCUg -3' miRNA: 3'- aCGG----AGGGCG-CUGg--GCGUGCAGaAGA- -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 129171 | 0.66 | 0.853183 |
Target: 5'- gGCCaCCCGCGgcACCUGUACGUg---- -3' miRNA: 3'- aCGGaGGGCGC--UGGGCGUGCAgaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 152016 | 0.66 | 0.853183 |
Target: 5'- aGCCcgaCGUGGCCCGCGgGUCcUCc -3' miRNA: 3'- aCGGaggGCGCUGGGCGUgCAGaAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 129249 | 0.66 | 0.845681 |
Target: 5'- cGCCg-CCGCGGCcaagCCGCugGUCa--- -3' miRNA: 3'- aCGGagGGCGCUG----GGCGugCAGaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 101945 | 0.66 | 0.830162 |
Target: 5'- aGCgaaaaUCCCGCGugCgCGCGcCGUCgcgUCg -3' miRNA: 3'- aCGg----AGGGCGCugG-GCGU-GCAGa--AGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 202119 | 0.66 | 0.830162 |
Target: 5'- cGCCgcaaggcCCCGCuggaacucgGACCCGC-CGUCgUCg -3' miRNA: 3'- aCGGa------GGGCG---------CUGGGCGuGCAGaAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 91295 | 0.66 | 0.822157 |
Target: 5'- aGCCag-CGCGGCCaCGCGCGUCa--- -3' miRNA: 3'- aCGGaggGCGCUGG-GCGUGCAGaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 195185 | 0.66 | 0.822157 |
Target: 5'- gUGCCccggggCCCGCGACUccucccuugCGCccGCGUCUugUCUg -3' miRNA: 3'- -ACGGa-----GGGCGCUGG---------GCG--UGCAGA--AGA- -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 235123 | 0.66 | 0.822157 |
Target: 5'- gUGCCccggggCCCGCGACUccucccuugCGCccGCGUCUugUCUg -3' miRNA: 3'- -ACGGa-----GGGCGCUGG---------GCG--UGCAGA--AGA- -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 28341 | 0.66 | 0.822157 |
Target: 5'- cGCCgaCCCGgGACCCugauGCugGUCa--- -3' miRNA: 3'- aCGGa-GGGCgCUGGG----CGugCAGaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 292 | 0.66 | 0.822157 |
Target: 5'- gUGCCccggggCCCGCGACUccucccuugCGCccGCGUCUugUCUg -3' miRNA: 3'- -ACGGa-----GGGCGCUGG---------GCG--UGCAGA--AGA- -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 39122 | 0.67 | 0.813998 |
Target: 5'- cGCgUCCCGCGGCgacagcugaCGCAgGUCcgUCg -3' miRNA: 3'- aCGgAGGGCGCUGg--------GCGUgCAGa-AGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 55590 | 0.67 | 0.813998 |
Target: 5'- aGCUaCCgagGCGACCCcCugGUCUUCa -3' miRNA: 3'- aCGGaGGg--CGCUGGGcGugCAGAAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 5670 | 0.67 | 0.813998 |
Target: 5'- gGUaggCCCGCGagaagGCUCGCACgGUCUUCc -3' miRNA: 3'- aCGga-GGGCGC-----UGGGCGUG-CAGAAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 234015 | 0.67 | 0.813998 |
Target: 5'- cGCgUCCCGCGGCgacagcugaCGCAgGUCcgUCg -3' miRNA: 3'- aCGgAGGGCGCUGg--------GCGUgCAGa-AGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 31991 | 0.67 | 0.797244 |
Target: 5'- cGCUgUUgCGCGACCCGCGCGcCa--- -3' miRNA: 3'- aCGG-AGgGCGCUGGGCGUGCaGaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 72969 | 0.67 | 0.788662 |
Target: 5'- cGCCUCCCGCucGGCCUGC-CGa----- -3' miRNA: 3'- aCGGAGGGCG--CUGGGCGuGCagaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 194356 | 0.67 | 0.788662 |
Target: 5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3' miRNA: 3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 234294 | 0.67 | 0.788662 |
Target: 5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3' miRNA: 3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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