miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30246 5' -59.9 NC_006273.1 + 235123 0.66 0.822157
Target:  5'- gUGCCccggggCCCGCGACUccucccuugCGCccGCGUCUugUCUg -3'
miRNA:   3'- -ACGGa-----GGGCGCUGG---------GCG--UGCAGA--AGA- -5'
30246 5' -59.9 NC_006273.1 + 234294 0.67 0.788662
Target:  5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3'
miRNA:   3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5'
30246 5' -59.9 NC_006273.1 + 234015 0.67 0.813998
Target:  5'- cGCgUCCCGCGGCgacagcugaCGCAgGUCcgUCg -3'
miRNA:   3'- aCGgAGGGCGCUGg--------GCGUgCAGa-AGa -5'
30246 5' -59.9 NC_006273.1 + 232840 0.77 0.293008
Target:  5'- aGCCUCgCCGCGGCCCGgACGUag-Ca -3'
miRNA:   3'- aCGGAG-GGCGCUGGGCgUGCAgaaGa -5'
30246 5' -59.9 NC_006273.1 + 228240 1.08 0.00259
Target:  5'- gUGCCUCCCGCGACCCGCACGUCUUCUa -3'
miRNA:   3'- -ACGGAGGGCGCUGGGCGUGCAGAAGA- -5'
30246 5' -59.9 NC_006273.1 + 214851 0.71 0.571929
Target:  5'- aGCCUCCUGCG-CCUGCAUGguggCgacggUCUc -3'
miRNA:   3'- aCGGAGGGCGCuGGGCGUGCa---Ga----AGA- -5'
30246 5' -59.9 NC_006273.1 + 213380 0.69 0.658786
Target:  5'- gGCCaccgaUCCCGCGGCCagcaGCcCGaUCUUCg -3'
miRNA:   3'- aCGG-----AGGGCGCUGGg---CGuGC-AGAAGa -5'
30246 5' -59.9 NC_006273.1 + 210063 0.69 0.68668
Target:  5'- cGCgUCCCuGCGACUCacaucuaGCuCGUCUUCUg -3'
miRNA:   3'- aCGgAGGG-CGCUGGG-------CGuGCAGAAGA- -5'
30246 5' -59.9 NC_006273.1 + 202119 0.66 0.830162
Target:  5'- cGCCgcaaggcCCCGCuggaacucgGACCCGC-CGUCgUCg -3'
miRNA:   3'- aCGGa------GGGCG---------CUGGGCGuGCAGaAGa -5'
30246 5' -59.9 NC_006273.1 + 197474 0.71 0.556686
Target:  5'- cGCCUCCCGCucacaacgcgugcgaGACCUGCGCGa----- -3'
miRNA:   3'- aCGGAGGGCG---------------CUGGGCGUGCagaaga -5'
30246 5' -59.9 NC_006273.1 + 195185 0.66 0.822157
Target:  5'- gUGCCccggggCCCGCGACUccucccuugCGCccGCGUCUugUCUg -3'
miRNA:   3'- -ACGGa-----GGGCGCUGG---------GCG--UGCAGA--AGA- -5'
30246 5' -59.9 NC_006273.1 + 194356 0.67 0.788662
Target:  5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3'
miRNA:   3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5'
30246 5' -59.9 NC_006273.1 + 187897 0.77 0.293008
Target:  5'- gGCCUCgCGCGGCUCGC-CGUCgUUCUc -3'
miRNA:   3'- aCGGAGgGCGCUGGGCGuGCAG-AAGA- -5'
30246 5' -59.9 NC_006273.1 + 181725 0.68 0.762192
Target:  5'- gGCCUaCCaucugaagcUGCGACCCGCcACGUUcggUCUg -3'
miRNA:   3'- aCGGA-GG---------GCGCUGGGCG-UGCAGa--AGA- -5'
30246 5' -59.9 NC_006273.1 + 175094 0.69 0.697181
Target:  5'- cGUCUCCCGaCGGCaCGC-CGUCUgugCUg -3'
miRNA:   3'- aCGGAGGGC-GCUGgGCGuGCAGAa--GA- -5'
30246 5' -59.9 NC_006273.1 + 170566 0.66 0.860506
Target:  5'- gGCCgaaCCGCGACUCcaggcgGCGCGgcaCUUCg -3'
miRNA:   3'- aCGGag-GGCGCUGGG------CGUGCa--GAAGa -5'
30246 5' -59.9 NC_006273.1 + 156696 0.67 0.771129
Target:  5'- cGCCUCCgGCGgcgguGCCCGCGgacccCGgcccCUUCUc -3'
miRNA:   3'- aCGGAGGgCGC-----UGGGCGU-----GCa---GAAGA- -5'
30246 5' -59.9 NC_006273.1 + 152016 0.66 0.853183
Target:  5'- aGCCcgaCGUGGCCCGCGgGUCcUCc -3'
miRNA:   3'- aCGGaggGCGCUGGGCGUgCAGaAGa -5'
30246 5' -59.9 NC_006273.1 + 143245 0.68 0.734793
Target:  5'- cUGCuCaUCUGCGACCCGCACGcgcgUUUCc -3'
miRNA:   3'- -ACG-GaGGGCGCUGGGCGUGCa---GAAGa -5'
30246 5' -59.9 NC_006273.1 + 141452 0.73 0.443126
Target:  5'- cGCCUCCCGCGgguccugGCCCGCGCa------ -3'
miRNA:   3'- aCGGAGGGCGC-------UGGGCGUGcagaaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.