Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30246 | 5' | -59.9 | NC_006273.1 | + | 152016 | 0.66 | 0.853183 |
Target: 5'- aGCCcgaCGUGGCCCGCGgGUCcUCc -3' miRNA: 3'- aCGGaggGCGCUGGGCGUgCAGaAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 156696 | 0.67 | 0.771129 |
Target: 5'- cGCCUCCgGCGgcgguGCCCGCGgacccCGgcccCUUCUc -3' miRNA: 3'- aCGGAGGgCGC-----UGGGCGU-----GCa---GAAGA- -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 194356 | 0.67 | 0.788662 |
Target: 5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3' miRNA: 3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 72969 | 0.67 | 0.788662 |
Target: 5'- cGCCUCCCGCucGGCCUGC-CGa----- -3' miRNA: 3'- aCGGAGGGCG--CUGGGCGuGCagaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 31991 | 0.67 | 0.797244 |
Target: 5'- cGCUgUUgCGCGACCCGCGCGcCa--- -3' miRNA: 3'- aCGG-AGgGCGCUGGGCGUGCaGaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 234015 | 0.67 | 0.813998 |
Target: 5'- cGCgUCCCGCGGCgacagcugaCGCAgGUCcgUCg -3' miRNA: 3'- aCGgAGGGCGCUGg--------GCGUgCAGa-AGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 195185 | 0.66 | 0.822157 |
Target: 5'- gUGCCccggggCCCGCGACUccucccuugCGCccGCGUCUugUCUg -3' miRNA: 3'- -ACGGa-----GGGCGCUGG---------GCG--UGCAGA--AGA- -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 101945 | 0.66 | 0.830162 |
Target: 5'- aGCgaaaaUCCCGCGugCgCGCGcCGUCgcgUCg -3' miRNA: 3'- aCGg----AGGGCGCugG-GCGU-GCAGa--AGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 129249 | 0.66 | 0.845681 |
Target: 5'- cGCCg-CCGCGGCcaagCCGCugGUCa--- -3' miRNA: 3'- aCGGagGGCGCUG----GGCGugCAGaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 143245 | 0.68 | 0.734793 |
Target: 5'- cUGCuCaUCUGCGACCCGCACGcgcgUUUCc -3' miRNA: 3'- -ACG-GaGGGCGCUGGGCGUGCa---GAAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 118763 | 0.69 | 0.706677 |
Target: 5'- aUGUCUgCCGCGGuaCGCACGUCgccgUCc -3' miRNA: 3'- -ACGGAgGGCGCUggGCGUGCAGa---AGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 68817 | 0.69 | 0.706677 |
Target: 5'- cGCguagCCgGCGGCgCCGCGCGUCaUCa -3' miRNA: 3'- aCGga--GGgCGCUG-GGCGUGCAGaAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 232840 | 0.77 | 0.293008 |
Target: 5'- aGCCUCgCCGCGGCCCGgACGUag-Ca -3' miRNA: 3'- aCGGAG-GGCGCUGGGCgUGCAgaaGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 66163 | 0.72 | 0.534052 |
Target: 5'- cGUCUgCCUGCGACCCGUagacuuucaGCGUCUg-- -3' miRNA: 3'- aCGGA-GGGCGCUGGGCG---------UGCAGAaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 214851 | 0.71 | 0.571929 |
Target: 5'- aGCCUCCUGCG-CCUGCAUGguggCgacggUCUc -3' miRNA: 3'- aCGGAGGGCGCuGGGCGUGCa---Ga----AGA- -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 87833 | 0.71 | 0.591116 |
Target: 5'- cGCugCUCCCGcCGACgCCGCcagccuCGUCUUCg -3' miRNA: 3'- aCG--GAGGGC-GCUG-GGCGu-----GCAGAAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 129682 | 0.7 | 0.600753 |
Target: 5'- cUGUCgUCCGCGACCCGUuaACGUCg--- -3' miRNA: 3'- -ACGGaGGGCGCUGGGCG--UGCAGaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 47872 | 0.7 | 0.604614 |
Target: 5'- cGCCgUCCUGUGACCgaCGCggcuucuucgucgccGCGUCUUCg -3' miRNA: 3'- aCGG-AGGGCGCUGG--GCG---------------UGCAGAAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 77180 | 0.69 | 0.678051 |
Target: 5'- cGCCUCaCGCugcacGACCUGCACGacaUCUUCc -3' miRNA: 3'- aCGGAGgGCG-----CUGGGCGUGC---AGAAGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 61906 | 0.69 | 0.706677 |
Target: 5'- cGCUUCCUGCGACaCCaGCACGaCggCg -3' miRNA: 3'- aCGGAGGGCGCUG-GG-CGUGCaGaaGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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