miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30246 5' -59.9 NC_006273.1 + 61906 0.69 0.706677
Target:  5'- cGCUUCCUGCGACaCCaGCACGaCggCg -3'
miRNA:   3'- aCGGAGGGCGCUG-GG-CGUGCaGaaGa -5'
30246 5' -59.9 NC_006273.1 + 68817 0.69 0.706677
Target:  5'- cGCguagCCgGCGGCgCCGCGCGUCaUCa -3'
miRNA:   3'- aCGga--GGgCGCUG-GGCGUGCAGaAGa -5'
30246 5' -59.9 NC_006273.1 + 119090 0.69 0.706677
Target:  5'- cGCCgUCCCGCgGGUCCGCACGggcaaaUUCUc -3'
miRNA:   3'- aCGG-AGGGCG-CUGGGCGUGCag----AAGA- -5'
30246 5' -59.9 NC_006273.1 + 131547 0.68 0.716116
Target:  5'- cGCgUUCCGCGaACgUGCGCGUCUg-- -3'
miRNA:   3'- aCGgAGGGCGC-UGgGCGUGCAGAaga -5'
30246 5' -59.9 NC_006273.1 + 132125 0.68 0.724556
Target:  5'- cGUCUaCCGCGuacaccuGCCCaaugaccaGCACGUCUUCUg -3'
miRNA:   3'- aCGGAgGGCGC-------UGGG--------CGUGCAGAAGA- -5'
30246 5' -59.9 NC_006273.1 + 181725 0.68 0.762192
Target:  5'- gGCCUaCCaucugaagcUGCGACCCGCcACGUUcggUCUg -3'
miRNA:   3'- aCGGA-GG---------GCGCUGGGCG-UGCAGa--AGA- -5'
30246 5' -59.9 NC_006273.1 + 234294 0.67 0.788662
Target:  5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3'
miRNA:   3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5'
30246 5' -59.9 NC_006273.1 + 5670 0.67 0.813998
Target:  5'- gGUaggCCCGCGagaagGCUCGCACgGUCUUCc -3'
miRNA:   3'- aCGga-GGGCGC-----UGGGCGUG-CAGAAGa -5'
30246 5' -59.9 NC_006273.1 + 55590 0.67 0.813998
Target:  5'- aGCUaCCgagGCGACCCcCugGUCUUCa -3'
miRNA:   3'- aCGGaGGg--CGCUGGGcGugCAGAAGa -5'
30246 5' -59.9 NC_006273.1 + 39122 0.67 0.813998
Target:  5'- cGCgUCCCGCGGCgacagcugaCGCAgGUCcgUCg -3'
miRNA:   3'- aCGgAGGGCGCUGg--------GCGUgCAGa-AGa -5'
30246 5' -59.9 NC_006273.1 + 175094 0.69 0.697181
Target:  5'- cGUCUCCCGaCGGCaCGC-CGUCUgugCUg -3'
miRNA:   3'- aCGGAGGGC-GCUGgGCGuGCAGAa--GA- -5'
30246 5' -59.9 NC_006273.1 + 96998 0.69 0.687637
Target:  5'- cGUCUCCCaguGUGACCUGCGCcgcgGUCUUa- -3'
miRNA:   3'- aCGGAGGG---CGCUGGGCGUG----CAGAAga -5'
30246 5' -59.9 NC_006273.1 + 18063 0.66 0.860506
Target:  5'- gGCCgcuaUCCCGCaGAUuuaCGCACGUUcUCUg -3'
miRNA:   3'- aCGG----AGGGCG-CUGg--GCGUGCAGaAGA- -5'
30246 5' -59.9 NC_006273.1 + 141452 0.73 0.443126
Target:  5'- cGCCUCCCGCGgguccugGCCCGCGCa------ -3'
miRNA:   3'- aCGGAGGGCGC-------UGGGCGUGcagaaga -5'
30246 5' -59.9 NC_006273.1 + 131412 0.72 0.534052
Target:  5'- cGCCUCCauggGCGAgUUCGCGCGUCUgCUa -3'
miRNA:   3'- aCGGAGGg---CGCU-GGGCGUGCAGAaGA- -5'
30246 5' -59.9 NC_006273.1 + 197474 0.71 0.556686
Target:  5'- cGCCUCCCGCucacaacgcgugcgaGACCUGCGCGa----- -3'
miRNA:   3'- aCGGAGGGCG---------------CUGGGCGUGCagaaga -5'
30246 5' -59.9 NC_006273.1 + 23331 0.7 0.648154
Target:  5'- gGCCUgggcgcccccaccCCCGCGACCCucGCGCGgagUCa -3'
miRNA:   3'- aCGGA-------------GGGCGCUGGG--CGUGCagaAGa -5'
30246 5' -59.9 NC_006273.1 + 213380 0.69 0.658786
Target:  5'- gGCCaccgaUCCCGCGGCCagcaGCcCGaUCUUCg -3'
miRNA:   3'- aCGG-----AGGGCGCUGGg---CGuGC-AGAAGa -5'
30246 5' -59.9 NC_006273.1 + 132195 0.69 0.668432
Target:  5'- aGCCUCUuuccgCGCGACCUGCucCGUCa--- -3'
miRNA:   3'- aCGGAGG-----GCGCUGGGCGu-GCAGaaga -5'
30246 5' -59.9 NC_006273.1 + 210063 0.69 0.68668
Target:  5'- cGCgUCCCuGCGACUCacaucuaGCuCGUCUUCUg -3'
miRNA:   3'- aCGgAGGG-CGCUGGG-------CGuGCAGAAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.