miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30246 5' -59.9 NC_006273.1 + 213380 0.69 0.658786
Target:  5'- gGCCaccgaUCCCGCGGCCagcaGCcCGaUCUUCg -3'
miRNA:   3'- aCGG-----AGGGCGCUGGg---CGuGC-AGAAGa -5'
30246 5' -59.9 NC_006273.1 + 132195 0.69 0.668432
Target:  5'- aGCCUCUuuccgCGCGACCUGCucCGUCa--- -3'
miRNA:   3'- aCGGAGG-----GCGCUGGGCGu-GCAGaaga -5'
30246 5' -59.9 NC_006273.1 + 210063 0.69 0.68668
Target:  5'- cGCgUCCCuGCGACUCacaucuaGCuCGUCUUCUg -3'
miRNA:   3'- aCGgAGGG-CGCUGGG-------CGuGCAGAAGA- -5'
30246 5' -59.9 NC_006273.1 + 96998 0.69 0.687637
Target:  5'- cGUCUCCCaguGUGACCUGCGCcgcgGUCUUa- -3'
miRNA:   3'- aCGGAGGG---CGCUGGGCGUG----CAGAAga -5'
30246 5' -59.9 NC_006273.1 + 175094 0.69 0.697181
Target:  5'- cGUCUCCCGaCGGCaCGC-CGUCUgugCUg -3'
miRNA:   3'- aCGGAGGGC-GCUGgGCGuGCAGAa--GA- -5'
30246 5' -59.9 NC_006273.1 + 119090 0.69 0.706677
Target:  5'- cGCCgUCCCGCgGGUCCGCACGggcaaaUUCUc -3'
miRNA:   3'- aCGG-AGGGCG-CUGGGCGUGCag----AAGA- -5'
30246 5' -59.9 NC_006273.1 + 187897 0.77 0.293008
Target:  5'- gGCCUCgCGCGGCUCGC-CGUCgUUCUc -3'
miRNA:   3'- aCGGAGgGCGCUGGGCGuGCAG-AAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.