miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30246 5' -59.9 NC_006273.1 + 101945 0.66 0.830162
Target:  5'- aGCgaaaaUCCCGCGugCgCGCGcCGUCgcgUCg -3'
miRNA:   3'- aCGg----AGGGCGCugG-GCGU-GCAGa--AGa -5'
30246 5' -59.9 NC_006273.1 + 234015 0.67 0.813998
Target:  5'- cGCgUCCCGCGGCgacagcugaCGCAgGUCcgUCg -3'
miRNA:   3'- aCGgAGGGCGCUGg--------GCGUgCAGa-AGa -5'
30246 5' -59.9 NC_006273.1 + 31991 0.67 0.797244
Target:  5'- cGCUgUUgCGCGACCCGCGCGcCa--- -3'
miRNA:   3'- aCGG-AGgGCGCUGGGCGUGCaGaaga -5'
30246 5' -59.9 NC_006273.1 + 72969 0.67 0.788662
Target:  5'- cGCCUCCCGCucGGCCUGC-CGa----- -3'
miRNA:   3'- aCGGAGGGCG--CUGGGCGuGCagaaga -5'
30246 5' -59.9 NC_006273.1 + 194356 0.67 0.788662
Target:  5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3'
miRNA:   3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5'
30246 5' -59.9 NC_006273.1 + 156696 0.67 0.771129
Target:  5'- cGCCUCCgGCGgcgguGCCCGCGgacccCGgcccCUUCUc -3'
miRNA:   3'- aCGGAGGgCGC-----UGGGCGU-----GCa---GAAGA- -5'
30246 5' -59.9 NC_006273.1 + 228240 1.08 0.00259
Target:  5'- gUGCCUCCCGCGACCCGCACGUCUUCUa -3'
miRNA:   3'- -ACGGAGGGCGCUGGGCGUGCAGAAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.