Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30246 | 5' | -59.9 | NC_006273.1 | + | 101945 | 0.66 | 0.830162 |
Target: 5'- aGCgaaaaUCCCGCGugCgCGCGcCGUCgcgUCg -3' miRNA: 3'- aCGg----AGGGCGCugG-GCGU-GCAGa--AGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 234015 | 0.67 | 0.813998 |
Target: 5'- cGCgUCCCGCGGCgacagcugaCGCAgGUCcgUCg -3' miRNA: 3'- aCGgAGGGCGCUGg--------GCGUgCAGa-AGa -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 31991 | 0.67 | 0.797244 |
Target: 5'- cGCUgUUgCGCGACCCGCGCGcCa--- -3' miRNA: 3'- aCGG-AGgGCGCUGGGCGUGCaGaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 72969 | 0.67 | 0.788662 |
Target: 5'- cGCCUCCCGCucGGCCUGC-CGa----- -3' miRNA: 3'- aCGGAGGGCG--CUGGGCGuGCagaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 194356 | 0.67 | 0.788662 |
Target: 5'- cGCCaUCCCGCGAcgccccgucCCCGCACa------ -3' miRNA: 3'- aCGG-AGGGCGCU---------GGGCGUGcagaaga -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 156696 | 0.67 | 0.771129 |
Target: 5'- cGCCUCCgGCGgcgguGCCCGCGgacccCGgcccCUUCUc -3' miRNA: 3'- aCGGAGGgCGC-----UGGGCGU-----GCa---GAAGA- -5' |
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30246 | 5' | -59.9 | NC_006273.1 | + | 228240 | 1.08 | 0.00259 |
Target: 5'- gUGCCUCCCGCGACCCGCACGUCUUCUa -3' miRNA: 3'- -ACGGAGGGCGCUGGGCGUGCAGAAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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