Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30247 | 3' | -53.6 | NC_006273.1 | + | 14016 | 0.66 | 0.983161 |
Target: 5'- --cGGGGUggCGGaGCGGGGAGCgCCGAu -3' miRNA: 3'- caaCUCUAa-GUCcUGCUCCUCG-GGUU- -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 22048 | 0.66 | 0.981154 |
Target: 5'- -cUGAGGcUCuGGuuGuGGAGCCCAu -3' miRNA: 3'- caACUCUaAGuCCugCuCCUCGGGUu -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 34796 | 0.67 | 0.972433 |
Target: 5'- --gGAGAUcaaaucggcccacuuUCGGGugGAGGAGaaCCAAu -3' miRNA: 3'- caaCUCUA---------------AGUCCugCUCCUCg-GGUU- -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 157417 | 0.67 | 0.97131 |
Target: 5'- -cUGAGAcg-AGGAgGAGGGGCCgCAGc -3' miRNA: 3'- caACUCUaagUCCUgCUCCUCGG-GUU- -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 63073 | 0.67 | 0.965198 |
Target: 5'- -aUGAGGaaCAGGAgGAGGGuGCUCAGg -3' miRNA: 3'- caACUCUaaGUCCUgCUCCU-CGGGUU- -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 94903 | 0.68 | 0.954402 |
Target: 5'- ---aAGGUUgGGGGCuGGGGGCCCGGu -3' miRNA: 3'- caacUCUAAgUCCUGcUCCUCGGGUU- -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 99062 | 0.68 | 0.954402 |
Target: 5'- -aUGGGAgggagAGGACGuGGGGCUCGAg -3' miRNA: 3'- caACUCUaag--UCCUGCuCCUCGGGUU- -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 212050 | 0.68 | 0.954402 |
Target: 5'- --cGAGggUCgcggGGGugGGGGcGCCCAGg -3' miRNA: 3'- caaCUCuaAG----UCCugCUCCuCGGGUU- -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 143925 | 0.68 | 0.95035 |
Target: 5'- -cUGGcGGUUUGGGACGAuGAGCCCc- -3' miRNA: 3'- caACU-CUAAGUCCUGCUcCUCGGGuu -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 145579 | 0.69 | 0.921054 |
Target: 5'- --gGGGGUgguggaCGGGACGugagcGGGGGCCCGAg -3' miRNA: 3'- caaCUCUAa-----GUCCUGC-----UCCUCGGGUU- -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 140390 | 0.7 | 0.896723 |
Target: 5'- --cGAGAgggGGGA-GGGGAGCCCAAc -3' miRNA: 3'- caaCUCUaagUCCUgCUCCUCGGGUU- -5' |
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30247 | 3' | -53.6 | NC_006273.1 | + | 228877 | 1.06 | 0.009686 |
Target: 5'- cGUUGAGAUUCAGGACGAGGAGCCCAAc -3' miRNA: 3'- -CAACUCUAAGUCCUGCUCCUCGGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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