miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30247 5' -60.5 NC_006273.1 + 109319 0.66 0.773286
Target:  5'- cGCUGGAuCCgGCACGCggccGGCgUAGAAc -3'
miRNA:   3'- uCGGCCUcGGgCGUGUGa---CCG-AUCUU- -5'
30247 5' -60.5 NC_006273.1 + 120999 0.66 0.764211
Target:  5'- cGUCGGAGUCCGaucCGCUGGUccAGAc -3'
miRNA:   3'- uCGGCCUCGGGCgu-GUGACCGa-UCUu -5'
30247 5' -60.5 NC_006273.1 + 8942 0.66 0.745744
Target:  5'- uGGCCuaucGGAGCCUGaCACGCaaaaaGCUGGAAc -3'
miRNA:   3'- -UCGG----CCUCGGGC-GUGUGac---CGAUCUU- -5'
30247 5' -60.5 NC_006273.1 + 148663 0.67 0.726907
Target:  5'- aGGCCGGccuggaGGUCUGCGCGCagcuGCUGGAGc -3'
miRNA:   3'- -UCGGCC------UCGGGCGUGUGac--CGAUCUU- -5'
30247 5' -60.5 NC_006273.1 + 13586 0.67 0.717371
Target:  5'- cGCCGGgcGGCCCGgGcCGCcGuGCUGGAGg -3'
miRNA:   3'- uCGGCC--UCGGGCgU-GUGaC-CGAUCUU- -5'
30247 5' -60.5 NC_006273.1 + 94647 0.67 0.711617
Target:  5'- -cCCGGGGUCCGCGCccuuccccuccccccACggggGGCUGGGu -3'
miRNA:   3'- ucGGCCUCGGGCGUG---------------UGa---CCGAUCUu -5'
30247 5' -60.5 NC_006273.1 + 16145 0.67 0.707767
Target:  5'- uGCCGGAGCUgCGCGaccaACU-GCUGGAc -3'
miRNA:   3'- uCGGCCUCGG-GCGUg---UGAcCGAUCUu -5'
30247 5' -60.5 NC_006273.1 + 175370 0.67 0.692281
Target:  5'- cGCgGGAGCUgccguccgacaggaaCGCGCugUGGCgcgAGAu -3'
miRNA:   3'- uCGgCCUCGG---------------GCGUGugACCGa--UCUu -5'
30247 5' -60.5 NC_006273.1 + 37355 0.68 0.678631
Target:  5'- gGGCCGGGGCCCGUuuuGCAUaaGCgcGGAg -3'
miRNA:   3'- -UCGGCCUCGGGCG---UGUGacCGauCUU- -5'
30247 5' -60.5 NC_006273.1 + 78682 0.68 0.678631
Target:  5'- gGGCCGGGGUCCGCggGCACcgccGCcGGAGg -3'
miRNA:   3'- -UCGGCCUCGGGCG--UGUGac--CGaUCUU- -5'
30247 5' -60.5 NC_006273.1 + 174119 0.68 0.649176
Target:  5'- cGGCCGcGcGCgCCGCgcuGCAgUGGCUGGAc -3'
miRNA:   3'- -UCGGC-CuCG-GGCG---UGUgACCGAUCUu -5'
30247 5' -60.5 NC_006273.1 + 25390 0.68 0.649176
Target:  5'- cGGCUGGcGaCCCGCAguCUGGCUuGGGu -3'
miRNA:   3'- -UCGGCCuC-GGGCGUguGACCGA-UCUu -5'
30247 5' -60.5 NC_006273.1 + 14360 0.68 0.639322
Target:  5'- cGCCGGAGCuccCCGCGcugcCugUGGCggcugAGGAu -3'
miRNA:   3'- uCGGCCUCG---GGCGU----GugACCGa----UCUU- -5'
30247 5' -60.5 NC_006273.1 + 14080 0.69 0.609758
Target:  5'- cGGCCGGGGCugugaaCCGCuCAgUGGCUcGGAc -3'
miRNA:   3'- -UCGGCCUCG------GGCGuGUgACCGA-UCUu -5'
30247 5' -60.5 NC_006273.1 + 140832 0.69 0.590115
Target:  5'- gGGCCGGAGCCCGgGgaggaGCgGGgUGGGGg -3'
miRNA:   3'- -UCGGCCUCGGGCgUg----UGaCCgAUCUU- -5'
30247 5' -60.5 NC_006273.1 + 177524 0.7 0.541606
Target:  5'- uAGUCgGGGGCCCGCugGCUcGGCgcGGc -3'
miRNA:   3'- -UCGG-CCUCGGGCGugUGA-CCGauCUu -5'
30247 5' -60.5 NC_006273.1 + 155241 0.78 0.198557
Target:  5'- aGGCCGGGGCCauCGCGCGgCUGGCUAa-- -3'
miRNA:   3'- -UCGGCCUCGG--GCGUGU-GACCGAUcuu -5'
30247 5' -60.5 NC_006273.1 + 1933 0.78 0.184734
Target:  5'- gGGCgCGGugcuGCCCGCGCGgUGGCUGGGu -3'
miRNA:   3'- -UCG-GCCu---CGGGCGUGUgACCGAUCUu -5'
30247 5' -60.5 NC_006273.1 + 196825 0.78 0.184734
Target:  5'- gGGCgCGGugcuGCCCGCGCGgUGGCUGGGu -3'
miRNA:   3'- -UCG-GCCu---CGGGCGUGUgACCGAUCUu -5'
30247 5' -60.5 NC_006273.1 + 28811 0.79 0.175998
Target:  5'- cGCCGGGGCCCuaggccgcacgGCACACUGGCUu--- -3'
miRNA:   3'- uCGGCCUCGGG-----------CGUGUGACCGAucuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.