miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30248 3' -55 NC_006273.1 + 109301 0.65 0.986795
Target:  5'- cGGCacGAcGAGGugGAccgCUggauccgGCACGCGGc -3'
miRNA:   3'- -CCG--CU-CUCCugCUa--GAag-----CGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 2387 0.65 0.986331
Target:  5'- uGGCGcuGGGGCGcgaGUCggCGCccgccgccgaggccGCGCGGc -3'
miRNA:   3'- -CCGCucUCCUGC---UAGaaGCG--------------UGCGCC- -5'
30248 3' -55 NC_006273.1 + 197280 0.65 0.986331
Target:  5'- uGGCGcuGGGGCGcgaGUCggCGCccgccgccgaggccGCGCGGc -3'
miRNA:   3'- -CCGCucUCCUGC---UAGaaGCG--------------UGCGCC- -5'
30248 3' -55 NC_006273.1 + 170926 0.65 0.986331
Target:  5'- uGGCuuacGGGGACGAUgUaccaguuuaauaggUCGCuCGCGGc -3'
miRNA:   3'- -CCGcu--CUCCUGCUAgA--------------AGCGuGCGCC- -5'
30248 3' -55 NC_006273.1 + 211426 0.66 0.985855
Target:  5'- aGGUGAGcAGGucggccucggaccacGCGAUCUcaaacagGCGCGUGGu -3'
miRNA:   3'- -CCGCUC-UCC---------------UGCUAGAag-----CGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 87881 0.66 0.985855
Target:  5'- aGCGAGcGGGCcgccgCUaucgccauggcccccUCGCACGUGGa -3'
miRNA:   3'- cCGCUCuCCUGcua--GA---------------AGCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 46988 0.66 0.985201
Target:  5'- cGGuCGAGGcGGugGAUCUgUGCGC-CGa -3'
miRNA:   3'- -CC-GCUCU-CCugCUAGAaGCGUGcGCc -5'
30248 3' -55 NC_006273.1 + 82061 0.66 0.984695
Target:  5'- cGGCGgcagaAGAGGAgacggaggagugaaCGGUCgccgUUGC-CGCGGc -3'
miRNA:   3'- -CCGC-----UCUCCU--------------GCUAGa---AGCGuGCGCC- -5'
30248 3' -55 NC_006273.1 + 158814 0.66 0.983465
Target:  5'- gGGCGAGGuGGGCG--CUUCGaguccacaGCGCGc -3'
miRNA:   3'- -CCGCUCU-CCUGCuaGAAGCg-------UGCGCc -5'
30248 3' -55 NC_006273.1 + 39213 0.66 0.983465
Target:  5'- cGGCGcccuuuGGACgGGUCagCGuCACGCGGc -3'
miRNA:   3'- -CCGCucu---CCUG-CUAGaaGC-GUGCGCC- -5'
30248 3' -55 NC_006273.1 + 203390 0.66 0.983465
Target:  5'- aGGUGGGuGG-CGcgCgggUCGCGCaacaGCGGa -3'
miRNA:   3'- -CCGCUCuCCuGCuaGa--AGCGUG----CGCC- -5'
30248 3' -55 NC_006273.1 + 38528 0.66 0.982351
Target:  5'- aGGgGAgacGAGGACGAcgggcaccaccgcggUCaaaaggUCGCACGaCGGu -3'
miRNA:   3'- -CCgCU---CUCCUGCU---------------AGa-----AGCGUGC-GCC- -5'
30248 3' -55 NC_006273.1 + 126131 0.66 0.981578
Target:  5'- cGCGAaaGAgguccugcacgcGGACGcccauGUCgguUCGCACGCGGu -3'
miRNA:   3'- cCGCU--CU------------CCUGC-----UAGa--AGCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 161807 0.66 0.981578
Target:  5'- cGGCGGGccAGGAC-AUCggagggucCGCGCGuCGGc -3'
miRNA:   3'- -CCGCUC--UCCUGcUAGaa------GCGUGC-GCC- -5'
30248 3' -55 NC_006273.1 + 133431 0.66 0.979535
Target:  5'- aGCGAcgcGACGG-CgcgCGCACGCGGg -3'
miRNA:   3'- cCGCUcucCUGCUaGaa-GCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 118072 0.66 0.979535
Target:  5'- cGCGGGAagaacGGACGGcgacgCUggaagCGCAgGCGGc -3'
miRNA:   3'- cCGCUCU-----CCUGCUa----GAa----GCGUgCGCC- -5'
30248 3' -55 NC_006273.1 + 145605 0.66 0.979535
Target:  5'- gGGCccGAGcGACGGUCUgggcggCGguCGUGGu -3'
miRNA:   3'- -CCGcuCUC-CUGCUAGAa-----GCguGCGCC- -5'
30248 3' -55 NC_006273.1 + 65516 0.66 0.979535
Target:  5'- aGCGAuAGcGGCGGccucuUCUUCGUcCGCGGu -3'
miRNA:   3'- cCGCUcUC-CUGCU-----AGAAGCGuGCGCC- -5'
30248 3' -55 NC_006273.1 + 103995 0.66 0.977328
Target:  5'- aGGCGugcguGGGGAUGAUggugcccaggUCGCGCGUGc -3'
miRNA:   3'- -CCGCu----CUCCUGCUAga--------AGCGUGCGCc -5'
30248 3' -55 NC_006273.1 + 149495 0.66 0.977328
Target:  5'- cGGCGGGAcauugcGGugGcgCUUguUGCGCGGg -3'
miRNA:   3'- -CCGCUCU------CCugCuaGAAgcGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.