miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30248 3' -55 NC_006273.1 + 229843 1.14 0.003568
Target:  5'- cGGCGAGAGGACGAUCUUCGCACGCGGg -3'
miRNA:   3'- -CCGCUCUCCUGCUAGAAGCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 166150 0.77 0.53398
Target:  5'- gGGCGGGAGGACGcgUgggagCGCGgGUGGu -3'
miRNA:   3'- -CCGCUCUCCUGCuaGaa---GCGUgCGCC- -5'
30248 3' -55 NC_006273.1 + 1977 0.77 0.53398
Target:  5'- cGGCGAcGGGGACGAcg-UCGCGCcaGCGGc -3'
miRNA:   3'- -CCGCU-CUCCUGCUagaAGCGUG--CGCC- -5'
30248 3' -55 NC_006273.1 + 30469 0.75 0.640861
Target:  5'- aGGCG-GAGGACagcGUUUUCacgaGCACGCGGg -3'
miRNA:   3'- -CCGCuCUCCUGc--UAGAAG----CGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 197002 0.75 0.650672
Target:  5'- cGGCGGGAGcGCGAUUUgcgUGCcaaACGCGGa -3'
miRNA:   3'- -CCGCUCUCcUGCUAGAa--GCG---UGCGCC- -5'
30248 3' -55 NC_006273.1 + 2109 0.75 0.650672
Target:  5'- cGGCGGGAGcGCGAUUUgcgUGCcaaACGCGGa -3'
miRNA:   3'- -CCGCUCUCcUGCUAGAa--GCG---UGCGCC- -5'
30248 3' -55 NC_006273.1 + 183086 0.74 0.689705
Target:  5'- cGGCGuugGGcaAGGugGcgCUUCGCuACGCGGu -3'
miRNA:   3'- -CCGC---UC--UCCugCuaGAAGCG-UGCGCC- -5'
30248 3' -55 NC_006273.1 + 164683 0.74 0.708988
Target:  5'- cGUG-GAGGGCGGUCgcaGCACGCGu -3'
miRNA:   3'- cCGCuCUCCUGCUAGaagCGUGCGCc -5'
30248 3' -55 NC_006273.1 + 202024 0.74 0.718543
Target:  5'- uGCGAcacGGGGACGcgCcgcaggaUCGCACGCGGc -3'
miRNA:   3'- cCGCU---CUCCUGCuaGa------AGCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 78535 0.73 0.756004
Target:  5'- cGGCGAc-GGAUGGgcg-CGCACGCGGa -3'
miRNA:   3'- -CCGCUcuCCUGCUagaaGCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 104322 0.72 0.824775
Target:  5'- uGGCGAugagcgccgagagGGGGAUGggCUg-GCGCGCGGc -3'
miRNA:   3'- -CCGCU-------------CUCCUGCuaGAagCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 162009 0.72 0.825588
Target:  5'- gGGCGAcGGGGAacuucaGGagcaccUCUUUGUACGCGGc -3'
miRNA:   3'- -CCGCU-CUCCUg-----CU------AGAAGCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 196869 0.72 0.825588
Target:  5'- cGGCGAcGGGGACGAcg-UCGCcgccaGCGGc -3'
miRNA:   3'- -CCGCU-CUCCUGCUagaAGCGug---CGCC- -5'
30248 3' -55 NC_006273.1 + 1251 0.71 0.849216
Target:  5'- cGGCGGGgacgGGGACGGgggccUUUCGCG-GCGGa -3'
miRNA:   3'- -CCGCUC----UCCUGCUa----GAAGCGUgCGCC- -5'
30248 3' -55 NC_006273.1 + 41189 0.71 0.849216
Target:  5'- cGGCGGGgacgGGGACGGgggccUUUCGCG-GCGGa -3'
miRNA:   3'- -CCGCUC----UCCUGCUa----GAAGCGUgCGCC- -5'
30248 3' -55 NC_006273.1 + 72318 0.71 0.849216
Target:  5'- cGGCGcugagugcaaAGAGGACGAUCUUgGUggGCu- -3'
miRNA:   3'- -CCGC----------UCUCCUGCUAGAAgCGugCGcc -5'
30248 3' -55 NC_006273.1 + 141107 0.71 0.856738
Target:  5'- gGGCGGGAGGcagGCGGgagCgggCGCAgcgUGCGGa -3'
miRNA:   3'- -CCGCUCUCC---UGCUa--Gaa-GCGU---GCGCC- -5'
30248 3' -55 NC_006273.1 + 162399 0.71 0.856738
Target:  5'- cGGCGGGAGcGGCGGUCa--GCACuccuCGGa -3'
miRNA:   3'- -CCGCUCUC-CUGCUAGaagCGUGc---GCC- -5'
30248 3' -55 NC_006273.1 + 190065 0.71 0.864072
Target:  5'- cGGCGGGGGGACGAacaccgUCggCGCcgaaacCGgGGg -3'
miRNA:   3'- -CCGCUCUCCUGCU------AGaaGCGu-----GCgCC- -5'
30248 3' -55 NC_006273.1 + 159976 0.71 0.871215
Target:  5'- uGGUGAGuacGGugGAUUgcgugccgcCGCACGUGGu -3'
miRNA:   3'- -CCGCUCu--CCugCUAGaa-------GCGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.