miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30248 3' -55 NC_006273.1 + 148822 0.67 0.97495
Target:  5'- cGCGAGcgaccggccGGcGGCGAUCgUCGCugGCu- -3'
miRNA:   3'- cCGCUC---------UC-CUGCUAGaAGCGugCGcc -5'
30248 3' -55 NC_006273.1 + 63769 0.67 0.97495
Target:  5'- gGGCGcgccucucGGAGGACGG-CgugacggUGUACGUGGa -3'
miRNA:   3'- -CCGC--------UCUCCUGCUaGaa-----GCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 98543 0.67 0.97495
Target:  5'- gGGaGAGGGGACG-UCggggcccuccgUCGCAC-CGGg -3'
miRNA:   3'- -CCgCUCUCCUGCuAGa----------AGCGUGcGCC- -5'
30248 3' -55 NC_006273.1 + 180045 0.67 0.974703
Target:  5'- -aCGAGAGcGGCGccGUCUUCGgcgugcaucccgaUACGCGGc -3'
miRNA:   3'- ccGCUCUC-CUGC--UAGAAGC-------------GUGCGCC- -5'
30248 3' -55 NC_006273.1 + 164261 0.67 0.972396
Target:  5'- aGGCGGcGAGG-CGAaaCUggUGCugGCGGc -3'
miRNA:   3'- -CCGCU-CUCCuGCUa-GAa-GCGugCGCC- -5'
30248 3' -55 NC_006273.1 + 21544 0.67 0.972396
Target:  5'- uGGCGuuucGAGGACGGcggcgCggCGCA-GCGGc -3'
miRNA:   3'- -CCGCu---CUCCUGCUa----GaaGCGUgCGCC- -5'
30248 3' -55 NC_006273.1 + 213960 0.67 0.971594
Target:  5'- aGC-AGAGGugGAcucggauagagaccUCUggccagUCGUGCGCGGg -3'
miRNA:   3'- cCGcUCUCCugCU--------------AGA------AGCGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 189188 0.67 0.969659
Target:  5'- uGGCuAGAGGucCGucuUCUUCGUcgGCGCGa -3'
miRNA:   3'- -CCGcUCUCCu-GCu--AGAAGCG--UGCGCc -5'
30248 3' -55 NC_006273.1 + 147436 0.67 0.969375
Target:  5'- cGGCGucgGGGGuGGCGGUCUUCuucucgGCGaguccguCGCGGg -3'
miRNA:   3'- -CCGC---UCUC-CUGCUAGAAG------CGU-------GCGCC- -5'
30248 3' -55 NC_006273.1 + 78842 0.67 0.966734
Target:  5'- cGCGAGAGGACG-UCacgCGUgACGCc- -3'
miRNA:   3'- cCGCUCUCCUGCuAGaa-GCG-UGCGcc -5'
30248 3' -55 NC_006273.1 + 48568 0.67 0.963615
Target:  5'- uGGCGGGgugaGGGGCGGcaugcCGUugGCGGc -3'
miRNA:   3'- -CCGCUC----UCCUGCUagaa-GCGugCGCC- -5'
30248 3' -55 NC_006273.1 + 136643 0.67 0.963615
Target:  5'- cGGCGAcGAGGAauucAUCUau-CACGCGGg -3'
miRNA:   3'- -CCGCU-CUCCUgc--UAGAagcGUGCGCC- -5'
30248 3' -55 NC_006273.1 + 233026 0.67 0.963615
Target:  5'- uGGCGAGGGGAUGGguuuauuggauaUCggugaaGCAgCGUGGc -3'
miRNA:   3'- -CCGCUCUCCUGCU------------AGaag---CGU-GCGCC- -5'
30248 3' -55 NC_006273.1 + 73839 0.67 0.963615
Target:  5'- cGGUccGAGGGGACGcuuUCccgccgUUCGCgugaGCGCGGc -3'
miRNA:   3'- -CCG--CUCUCCUGCu--AG------AAGCG----UGCGCC- -5'
30248 3' -55 NC_006273.1 + 76548 0.68 0.960297
Target:  5'- cGGCGcacGAGGACGugg--CGCGCuGUGGa -3'
miRNA:   3'- -CCGCu--CUCCUGCuagaaGCGUG-CGCC- -5'
30248 3' -55 NC_006273.1 + 71637 0.68 0.960297
Target:  5'- uGGgGGGAGGACGAggaggacgUCGCugcuaaaccgccGCGCGc -3'
miRNA:   3'- -CCgCUCUCCUGCUaga-----AGCG------------UGCGCc -5'
30248 3' -55 NC_006273.1 + 41097 0.68 0.960297
Target:  5'- cGGUGGuGAGGACGGggacaggggcaUUUCGCG-GCGGg -3'
miRNA:   3'- -CCGCU-CUCCUGCUa----------GAAGCGUgCGCC- -5'
30248 3' -55 NC_006273.1 + 1159 0.68 0.960297
Target:  5'- cGGUGGuGAGGACGGggacaggggcaUUUCGCG-GCGGg -3'
miRNA:   3'- -CCGCU-CUCCUGCUa----------GAAGCGUgCGCC- -5'
30248 3' -55 NC_006273.1 + 43815 0.68 0.960297
Target:  5'- cGGCGuuuucGGGACGGUCggUuaACGUGGg -3'
miRNA:   3'- -CCGCuc---UCCUGCUAGaaGcgUGCGCC- -5'
30248 3' -55 NC_006273.1 + 89317 0.68 0.959954
Target:  5'- gGGUGGGuGGACGuugugaaAUCUUCuuuugGCGCGGa -3'
miRNA:   3'- -CCGCUCuCCUGC-------UAGAAGcg---UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.