miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 3' -49.6 NC_006273.1 + 28901 0.66 0.999305
Target:  5'- cGACGCcgGAUAAcgagGCAGCGgucuuUGGgCCAg -3'
miRNA:   3'- -CUGCGa-CUAUUaa--CGUUGU-----ACCgGGU- -5'
30249 3' -49.6 NC_006273.1 + 159121 0.66 0.999305
Target:  5'- -cCGCUGGUGccaccgccGUUGUGAC--GGCCCGg -3'
miRNA:   3'- cuGCGACUAU--------UAACGUUGuaCCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 147132 0.66 0.999036
Target:  5'- uGGCGCUGGacgccgagaacuugGAUUGCGACcccgaagugAUGGCCg- -3'
miRNA:   3'- -CUGCGACUa-------------UUAACGUUG---------UACCGGgu -5'
30249 3' -49.6 NC_006273.1 + 79584 0.66 0.998956
Target:  5'- uGACGCUGuAUAcgU-CGGCAgGGUCCAc -3'
miRNA:   3'- -CUGCGAC-UAUuaAcGUUGUaCCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 207727 0.66 0.998956
Target:  5'- uACGCUGAUGA-UGgAACAcGGUCUg -3'
miRNA:   3'- cUGCGACUAUUaACgUUGUaCCGGGu -5'
30249 3' -49.6 NC_006273.1 + 104587 0.66 0.998956
Target:  5'- cGCGCcGGcacgaUGCAGC-UGGCCCAg -3'
miRNA:   3'- cUGCGaCUauua-ACGUUGuACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 205204 0.66 0.998956
Target:  5'- aGACGgaGcGUGGUgUGCGACG-GGCCCc -3'
miRNA:   3'- -CUGCgaC-UAUUA-ACGUUGUaCCGGGu -5'
30249 3' -49.6 NC_006273.1 + 204850 0.66 0.998956
Target:  5'- aGACGCUGu--AggGCGACAaaccGGCCUc -3'
miRNA:   3'- -CUGCGACuauUaaCGUUGUa---CCGGGu -5'
30249 3' -49.6 NC_006273.1 + 187377 0.66 0.998956
Target:  5'- cACGCUGuuucucUGGUUaGCGACGUGGaCCGa -3'
miRNA:   3'- cUGCGACu-----AUUAA-CGUUGUACCgGGU- -5'
30249 3' -49.6 NC_006273.1 + 222179 0.66 0.998732
Target:  5'- aGACGCUGuaac--GCcGCAcgGGCCCGu -3'
miRNA:   3'- -CUGCGACuauuaaCGuUGUa-CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 8853 0.66 0.998732
Target:  5'- cACGCUGAUAGUccUGCug-GUGGUCUu -3'
miRNA:   3'- cUGCGACUAUUA--ACGuugUACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 66756 0.66 0.998682
Target:  5'- aGACGCUGGUGcgcgacccggGCAGCcgcGGCUCGg -3'
miRNA:   3'- -CUGCGACUAUuaa-------CGUUGua-CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 144924 0.67 0.998468
Target:  5'- cGCGCUGAccgagcucaAGUUGCAucucucgacgcACGUGGCCg- -3'
miRNA:   3'- cUGCGACUa--------UUAACGU-----------UGUACCGGgu -5'
30249 3' -49.6 NC_006273.1 + 64437 0.67 0.998468
Target:  5'- -uCGCcugGGUAGcaugUGCAACcUGGCCCu -3'
miRNA:   3'- cuGCGa--CUAUUa---ACGUUGuACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 15204 0.67 0.998159
Target:  5'- aGACGCUGA--AUUGCAc---GGUCCGg -3'
miRNA:   3'- -CUGCGACUauUAACGUuguaCCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 55671 0.67 0.998159
Target:  5'- cGGCGC--GUAGUUGCG-CA-GGCCCu -3'
miRNA:   3'- -CUGCGacUAUUAACGUuGUaCCGGGu -5'
30249 3' -49.6 NC_006273.1 + 147934 0.67 0.997799
Target:  5'- gGACGCcGAUGAgcGuCGGCGcGGCCUAg -3'
miRNA:   3'- -CUGCGaCUAUUaaC-GUUGUaCCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 117856 0.67 0.996901
Target:  5'- gGGCGCUGccga--GCGAC-UGGCCCc -3'
miRNA:   3'- -CUGCGACuauuaaCGUUGuACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 99818 0.67 0.996901
Target:  5'- -gUGCUGcuGUGGUUGCGACgGUGGCUgGg -3'
miRNA:   3'- cuGCGAC--UAUUAACGUUG-UACCGGgU- -5'
30249 3' -49.6 NC_006273.1 + 162771 0.68 0.99635
Target:  5'- uGGCGgUGGUGGUggcgGCGGCAgcGGCCgCAu -3'
miRNA:   3'- -CUGCgACUAUUAa---CGUUGUa-CCGG-GU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.