miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 3' -49.6 NC_006273.1 + 230328 1.09 0.015319
Target:  5'- uGACGCUGAUAAUUGCAACAUGGCCCAu -3'
miRNA:   3'- -CUGCGACUAUUAACGUUGUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 5379 0.73 0.912628
Target:  5'- uGACGCUGAUGAUgGgGACAUGuuuCCCGa -3'
miRNA:   3'- -CUGCGACUAUUAaCgUUGUACc--GGGU- -5'
30249 3' -49.6 NC_006273.1 + 167030 0.72 0.957479
Target:  5'- aGGCGCUGAU--UUGCAGCugcacGGCCg- -3'
miRNA:   3'- -CUGCGACUAuuAACGUUGua---CCGGgu -5'
30249 3' -49.6 NC_006273.1 + 115683 0.71 0.96473
Target:  5'- uGACGCUGGUAGacgcccuggaGCAGC-UGGCCUg -3'
miRNA:   3'- -CUGCGACUAUUaa--------CGUUGuACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 220735 0.71 0.96473
Target:  5'- cAUGCcaucaUGGUGAUcGCGACGUGGCUCGg -3'
miRNA:   3'- cUGCG-----ACUAUUAaCGUUGUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 15007 0.71 0.973633
Target:  5'- --gGCUGAUGAaaacggUGCAGCAguuacaccgcauuUGGCCCu -3'
miRNA:   3'- cugCGACUAUUa-----ACGUUGU-------------ACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 150775 0.7 0.983272
Target:  5'- gGGCGCUGugg--UGCAGCAgccGGCCgAa -3'
miRNA:   3'- -CUGCGACuauuaACGUUGUa--CCGGgU- -5'
30249 3' -49.6 NC_006273.1 + 103255 0.7 0.983272
Target:  5'- -cCGCUGAUAcucUGCAACAc-GCCCAg -3'
miRNA:   3'- cuGCGACUAUua-ACGUUGUacCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 144789 0.7 0.985154
Target:  5'- uGACGC-GGUGGuUUGCGAguUGGCCUu -3'
miRNA:   3'- -CUGCGaCUAUU-AACGUUguACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 83029 0.69 0.98687
Target:  5'- uGACGCUGGUuuGGUUgauggucacGCAGCuggccaGGCCCAa -3'
miRNA:   3'- -CUGCGACUA--UUAA---------CGUUGua----CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 99829 0.69 0.992258
Target:  5'- cGGCGCUGAUGAUguuGACGUcGUCCAg -3'
miRNA:   3'- -CUGCGACUAUUAacgUUGUAcCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 167234 0.68 0.992886
Target:  5'- gGugGCUGGUAAggucgaucauggGCGGCGUGGUgaCCGu -3'
miRNA:   3'- -CugCGACUAUUaa----------CGUUGUACCG--GGU- -5'
30249 3' -49.6 NC_006273.1 + 97615 0.68 0.993282
Target:  5'- cGACGCcGAUGu-----ACGUGGCCCAc -3'
miRNA:   3'- -CUGCGaCUAUuaacguUGUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 195756 0.68 0.994195
Target:  5'- gGACGUcggaGGUGuccgGCGGcCAUGGCCCAg -3'
miRNA:   3'- -CUGCGa---CUAUuaa-CGUU-GUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 864 0.68 0.994195
Target:  5'- gGACGUcggaGGUGuccgGCGGcCAUGGCCCAg -3'
miRNA:   3'- -CUGCGa---CUAUuaa-CGUU-GUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 115364 0.68 0.995004
Target:  5'- cGACuGCUGGUGGaccuCAACAacuuUGGCCCAc -3'
miRNA:   3'- -CUG-CGACUAUUaac-GUUGU----ACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 190207 0.68 0.99572
Target:  5'- cACGCUGAaca--GCAGCGgcuacaggGGCCCGa -3'
miRNA:   3'- cUGCGACUauuaaCGUUGUa-------CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 105039 0.68 0.99572
Target:  5'- -uCGCUGGUGGaggUGCAGCGcguuaugGGCCUg -3'
miRNA:   3'- cuGCGACUAUUa--ACGUUGUa------CCGGGu -5'
30249 3' -49.6 NC_006273.1 + 162002 0.68 0.996108
Target:  5'- cGugGCUGcccgcgcgcuUUGCGACucugGGCCCGc -3'
miRNA:   3'- -CugCGACuauu------AACGUUGua--CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 120554 0.68 0.99635
Target:  5'- gGGCGUcGAg----GCGauGCAUGGCCCGg -3'
miRNA:   3'- -CUGCGaCUauuaaCGU--UGUACCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.