miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 3' -49.6 NC_006273.1 + 864 0.68 0.994195
Target:  5'- gGACGUcggaGGUGuccgGCGGcCAUGGCCCAg -3'
miRNA:   3'- -CUGCGa---CUAUuaa-CGUU-GUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 5379 0.73 0.912628
Target:  5'- uGACGCUGAUGAUgGgGACAUGuuuCCCGa -3'
miRNA:   3'- -CUGCGACUAUUAaCgUUGUACc--GGGU- -5'
30249 3' -49.6 NC_006273.1 + 8853 0.66 0.998732
Target:  5'- cACGCUGAUAGUccUGCug-GUGGUCUu -3'
miRNA:   3'- cUGCGACUAUUA--ACGuugUACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 15007 0.71 0.973633
Target:  5'- --gGCUGAUGAaaacggUGCAGCAguuacaccgcauuUGGCCCu -3'
miRNA:   3'- cugCGACUAUUa-----ACGUUGU-------------ACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 15204 0.67 0.998159
Target:  5'- aGACGCUGA--AUUGCAc---GGUCCGg -3'
miRNA:   3'- -CUGCGACUauUAACGUuguaCCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 28901 0.66 0.999305
Target:  5'- cGACGCcgGAUAAcgagGCAGCGgucuuUGGgCCAg -3'
miRNA:   3'- -CUGCGa-CUAUUaa--CGUUGU-----ACCgGGU- -5'
30249 3' -49.6 NC_006273.1 + 55671 0.67 0.998159
Target:  5'- cGGCGC--GUAGUUGCG-CA-GGCCCu -3'
miRNA:   3'- -CUGCGacUAUUAACGUuGUaCCGGGu -5'
30249 3' -49.6 NC_006273.1 + 64437 0.67 0.998468
Target:  5'- -uCGCcugGGUAGcaugUGCAACcUGGCCCu -3'
miRNA:   3'- cuGCGa--CUAUUa---ACGUUGuACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 66756 0.66 0.998682
Target:  5'- aGACGCUGGUGcgcgacccggGCAGCcgcGGCUCGg -3'
miRNA:   3'- -CUGCGACUAUuaa-------CGUUGua-CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 79584 0.66 0.998956
Target:  5'- uGACGCUGuAUAcgU-CGGCAgGGUCCAc -3'
miRNA:   3'- -CUGCGAC-UAUuaAcGUUGUaCCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 83029 0.69 0.98687
Target:  5'- uGACGCUGGUuuGGUUgauggucacGCAGCuggccaGGCCCAa -3'
miRNA:   3'- -CUGCGACUA--UUAA---------CGUUGua----CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 97615 0.68 0.993282
Target:  5'- cGACGCcGAUGu-----ACGUGGCCCAc -3'
miRNA:   3'- -CUGCGaCUAUuaacguUGUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 99818 0.67 0.996901
Target:  5'- -gUGCUGcuGUGGUUGCGACgGUGGCUgGg -3'
miRNA:   3'- cuGCGAC--UAUUAACGUUG-UACCGGgU- -5'
30249 3' -49.6 NC_006273.1 + 99829 0.69 0.992258
Target:  5'- cGGCGCUGAUGAUguuGACGUcGUCCAg -3'
miRNA:   3'- -CUGCGACUAUUAacgUUGUAcCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 103255 0.7 0.983272
Target:  5'- -cCGCUGAUAcucUGCAACAc-GCCCAg -3'
miRNA:   3'- cuGCGACUAUua-ACGUUGUacCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 104587 0.66 0.998956
Target:  5'- cGCGCcGGcacgaUGCAGC-UGGCCCAg -3'
miRNA:   3'- cUGCGaCUauua-ACGUUGuACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 105039 0.68 0.99572
Target:  5'- -uCGCUGGUGGaggUGCAGCGcguuaugGGCCUg -3'
miRNA:   3'- cuGCGACUAUUa--ACGUUGUa------CCGGGu -5'
30249 3' -49.6 NC_006273.1 + 115364 0.68 0.995004
Target:  5'- cGACuGCUGGUGGaccuCAACAacuuUGGCCCAc -3'
miRNA:   3'- -CUG-CGACUAUUaac-GUUGU----ACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 115683 0.71 0.96473
Target:  5'- uGACGCUGGUAGacgcccuggaGCAGC-UGGCCUg -3'
miRNA:   3'- -CUGCGACUAUUaa--------CGUUGuACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 117856 0.67 0.996901
Target:  5'- gGGCGCUGccga--GCGAC-UGGCCCc -3'
miRNA:   3'- -CUGCGACuauuaaCGUUGuACCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.