miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 3' -49.6 NC_006273.1 + 104587 0.66 0.998956
Target:  5'- cGCGCcGGcacgaUGCAGC-UGGCCCAg -3'
miRNA:   3'- cUGCGaCUauua-ACGUUGuACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 99818 0.67 0.996901
Target:  5'- -gUGCUGcuGUGGUUGCGACgGUGGCUgGg -3'
miRNA:   3'- cuGCGAC--UAUUAACGUUG-UACCGGgU- -5'
30249 3' -49.6 NC_006273.1 + 147934 0.67 0.997799
Target:  5'- gGACGCcGAUGAgcGuCGGCGcGGCCUAg -3'
miRNA:   3'- -CUGCGaCUAUUaaC-GUUGUaCCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 15204 0.67 0.998159
Target:  5'- aGACGCUGA--AUUGCAc---GGUCCGg -3'
miRNA:   3'- -CUGCGACUauUAACGUuguaCCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 55671 0.67 0.998159
Target:  5'- cGGCGC--GUAGUUGCG-CA-GGCCCu -3'
miRNA:   3'- -CUGCGacUAUUAACGUuGUaCCGGGu -5'
30249 3' -49.6 NC_006273.1 + 66756 0.66 0.998682
Target:  5'- aGACGCUGGUGcgcgacccggGCAGCcgcGGCUCGg -3'
miRNA:   3'- -CUGCGACUAUuaa-------CGUUGua-CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 8853 0.66 0.998732
Target:  5'- cACGCUGAUAGUccUGCug-GUGGUCUu -3'
miRNA:   3'- cUGCGACUAUUA--ACGuugUACCGGGu -5'
30249 3' -49.6 NC_006273.1 + 222179 0.66 0.998732
Target:  5'- aGACGCUGuaac--GCcGCAcgGGCCCGu -3'
miRNA:   3'- -CUGCGACuauuaaCGuUGUa-CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 207727 0.66 0.998956
Target:  5'- uACGCUGAUGA-UGgAACAcGGUCUg -3'
miRNA:   3'- cUGCGACUAUUaACgUUGUaCCGGGu -5'
30249 3' -49.6 NC_006273.1 + 162771 0.68 0.99635
Target:  5'- uGGCGgUGGUGGUggcgGCGGCAgcGGCCgCAu -3'
miRNA:   3'- -CUGCgACUAUUAa---CGUUGUa-CCGG-GU- -5'
30249 3' -49.6 NC_006273.1 + 120898 0.68 0.99635
Target:  5'- gGAUGCUGAU--UUGCGuuugcGGCCCGc -3'
miRNA:   3'- -CUGCGACUAuuAACGUugua-CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 120554 0.68 0.99635
Target:  5'- gGGCGUcGAg----GCGauGCAUGGCCCGg -3'
miRNA:   3'- -CUGCGaCUauuaaCGU--UGUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 167030 0.72 0.957479
Target:  5'- aGGCGCUGAU--UUGCAGCugcacGGCCg- -3'
miRNA:   3'- -CUGCGACUAuuAACGUUGua---CCGGgu -5'
30249 3' -49.6 NC_006273.1 + 220735 0.71 0.96473
Target:  5'- cAUGCcaucaUGGUGAUcGCGACGUGGCUCGg -3'
miRNA:   3'- cUGCG-----ACUAUUAaCGUUGUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 150775 0.7 0.983272
Target:  5'- gGGCGCUGugg--UGCAGCAgccGGCCgAa -3'
miRNA:   3'- -CUGCGACuauuaACGUUGUa--CCGGgU- -5'
30249 3' -49.6 NC_006273.1 + 83029 0.69 0.98687
Target:  5'- uGACGCUGGUuuGGUUgauggucacGCAGCuggccaGGCCCAa -3'
miRNA:   3'- -CUGCGACUA--UUAA---------CGUUGua----CCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 167234 0.68 0.992886
Target:  5'- gGugGCUGGUAAggucgaucauggGCGGCGUGGUgaCCGu -3'
miRNA:   3'- -CugCGACUAUUaa----------CGUUGUACCG--GGU- -5'
30249 3' -49.6 NC_006273.1 + 195756 0.68 0.994195
Target:  5'- gGACGUcggaGGUGuccgGCGGcCAUGGCCCAg -3'
miRNA:   3'- -CUGCGa---CUAUuaa-CGUU-GUACCGGGU- -5'
30249 3' -49.6 NC_006273.1 + 105039 0.68 0.99572
Target:  5'- -uCGCUGGUGGaggUGCAGCGcguuaugGGCCUg -3'
miRNA:   3'- cuGCGACUAUUa--ACGUUGUa------CCGGGu -5'
30249 3' -49.6 NC_006273.1 + 190207 0.68 0.99572
Target:  5'- cACGCUGAaca--GCAGCGgcuacaggGGCCCGa -3'
miRNA:   3'- cUGCGACUauuaaCGUUGUa-------CCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.