miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 5' -49.4 NC_006273.1 + 133566 0.66 0.999828
Target:  5'- -cUGGGuuACGAuCGUCucguuucugccGAUGCCgGCGUCa -3'
miRNA:   3'- gaACCC--UGCUuGCAG-----------UUAUGG-UGCAG- -5'
30249 5' -49.4 NC_006273.1 + 202937 0.66 0.999828
Target:  5'- --aGaGGACGAGCGUCcacacACCGCuuugGUCg -3'
miRNA:   3'- gaaC-CCUGCUUGCAGuua--UGGUG----CAG- -5'
30249 5' -49.4 NC_006273.1 + 109131 0.66 0.999823
Target:  5'- ---aGGAgGAACGcgacaUCAgcaccacGUACCACGUCa -3'
miRNA:   3'- gaacCCUgCUUGC-----AGU-------UAUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 2157 0.66 0.999781
Target:  5'- --cGGGGCGGACG-CGAcgGCgGCGg- -3'
miRNA:   3'- gaaCCCUGCUUGCaGUUa-UGgUGCag -5'
30249 5' -49.4 NC_006273.1 + 197050 0.66 0.999781
Target:  5'- --cGGGGCGGACG-CGAcgGCgGCGg- -3'
miRNA:   3'- gaaCCCUGCUUGCaGUUa-UGgUGCag -5'
30249 5' -49.4 NC_006273.1 + 196876 0.66 0.999781
Target:  5'- --gGGGACG-ACGUCGccGCCAgCGg- -3'
miRNA:   3'- gaaCCCUGCuUGCAGUuaUGGU-GCag -5'
30249 5' -49.4 NC_006273.1 + 208177 0.66 0.999781
Target:  5'- --cGGGACGAaagacgACGUCAGgggauUCACGg- -3'
miRNA:   3'- gaaCCCUGCU------UGCAGUUau---GGUGCag -5'
30249 5' -49.4 NC_006273.1 + 231163 0.66 0.999723
Target:  5'- aCUUGGGGCGGugGgucCGA-GCUGCGg- -3'
miRNA:   3'- -GAACCCUGCUugCa--GUUaUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 193230 0.66 0.999723
Target:  5'- -cUGGcGGCGGcgGCGUUAAUGCUGcCGUUg -3'
miRNA:   3'- gaACC-CUGCU--UGCAGUUAUGGU-GCAG- -5'
30249 5' -49.4 NC_006273.1 + 12881 0.66 0.999723
Target:  5'- --cGuGGACGAcgccgaACGUCuggaAGUGCCGgGUCg -3'
miRNA:   3'- gaaC-CCUGCU------UGCAG----UUAUGGUgCAG- -5'
30249 5' -49.4 NC_006273.1 + 128287 0.66 0.999723
Target:  5'- --gGGGAaGAaaaACGUCAGguCCACGUUa -3'
miRNA:   3'- gaaCCCUgCU---UGCAGUUauGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 113888 0.66 0.999723
Target:  5'- ---aGGGCGGcuguUGUCAGUgacccuGCCGCGUCa -3'
miRNA:   3'- gaacCCUGCUu---GCAGUUA------UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 208913 0.66 0.999652
Target:  5'- --aGGGACGAguaGUC---GCCGCGUg -3'
miRNA:   3'- gaaCCCUGCUug-CAGuuaUGGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 215985 0.66 0.999652
Target:  5'- --gGGGAUGAGCa-CGAUGCCGugcuUGUCa -3'
miRNA:   3'- gaaCCCUGCUUGcaGUUAUGGU----GCAG- -5'
30249 5' -49.4 NC_006273.1 + 179498 0.66 0.999652
Target:  5'- gUUGuGGGCGuucacCGUCGuugACCACGUa -3'
miRNA:   3'- gAAC-CCUGCuu---GCAGUua-UGGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 4685 0.66 0.999652
Target:  5'- -aUGGGugGAugGUCcg-ACCGgGa- -3'
miRNA:   3'- gaACCCugCUugCAGuuaUGGUgCag -5'
30249 5' -49.4 NC_006273.1 + 43451 0.67 0.999567
Target:  5'- aCUUGGG-CGc-CGUCA-UGCCGCGa- -3'
miRNA:   3'- -GAACCCuGCuuGCAGUuAUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 35643 0.67 0.999567
Target:  5'- aCUUGGGAaaGAGCGUaCAGU-CCACa-- -3'
miRNA:   3'- -GAACCCUg-CUUGCA-GUUAuGGUGcag -5'
30249 5' -49.4 NC_006273.1 + 142816 0.67 0.999507
Target:  5'- -gUGGGcACGGGCGugcaccgcggucugcUCAcgGCCACGg- -3'
miRNA:   3'- gaACCC-UGCUUGC---------------AGUuaUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 139681 0.67 0.999463
Target:  5'- -gUGGGACGGGCGcCGucACUcguuCGUCu -3'
miRNA:   3'- gaACCCUGCUUGCaGUuaUGGu---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.