miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 5' -49.4 NC_006273.1 + 230365 1.11 0.014931
Target:  5'- gCUUGGGACGAACGUCAAUACCACGUCa -3'
miRNA:   3'- -GAACCCUGCUUGCAGUUAUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 213639 0.81 0.629833
Target:  5'- --aGGGAuCGGGCGUCcacaGGUACCGCGUCu -3'
miRNA:   3'- gaaCCCU-GCUUGCAG----UUAUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 198174 0.77 0.841988
Target:  5'- -cUGGGcACGcGCGUCG--GCCGCGUCg -3'
miRNA:   3'- gaACCC-UGCuUGCAGUuaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 67496 0.76 0.862628
Target:  5'- gUUGGcGGCGAugGUCAuguucucccaggACCACGUCc -3'
miRNA:   3'- gAACC-CUGCUugCAGUua----------UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 190151 0.72 0.970498
Target:  5'- --cGGGACGc-CGUCGAUgaccguauuggACCAUGUCg -3'
miRNA:   3'- gaaCCCUGCuuGCAGUUA-----------UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 196400 0.72 0.973319
Target:  5'- cCUUGGuGAUGAGCGguugCAGcACCACGg- -3'
miRNA:   3'- -GAACC-CUGCUUGCa---GUUaUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 13825 0.72 0.975939
Target:  5'- -aUGGcGACGGACGUCGggACCgACGg- -3'
miRNA:   3'- gaACC-CUGCUUGCAGUuaUGG-UGCag -5'
30249 5' -49.4 NC_006273.1 + 91749 0.72 0.978366
Target:  5'- --cGGGACGGcuuuGCGUCAccGCCaacuaACGUCg -3'
miRNA:   3'- gaaCCCUGCU----UGCAGUuaUGG-----UGCAG- -5'
30249 5' -49.4 NC_006273.1 + 46880 0.71 0.98039
Target:  5'- -gUGGGACuuGGACGUUggaaauaAAUGCgGCGUCg -3'
miRNA:   3'- gaACCCUG--CUUGCAG-------UUAUGgUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 207949 0.7 0.989307
Target:  5'- --aGaGGAgGccuacguagcccAugGUCAAUACCACGUCg -3'
miRNA:   3'- gaaC-CCUgC------------UugCAGUUAUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 210232 0.7 0.990605
Target:  5'- -gUGGcGAUGGACGUCAAccgACCGCa-- -3'
miRNA:   3'- gaACC-CUGCUUGCAGUUa--UGGUGcag -5'
30249 5' -49.4 NC_006273.1 + 213051 0.7 0.991438
Target:  5'- -aUGGGACcGACGUCGgagucgcggcGUucguuggcgccgcuGCCGCGUCg -3'
miRNA:   3'- gaACCCUGcUUGCAGU----------UA--------------UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 148753 0.7 0.991776
Target:  5'- --aGGGACGAcauGCGccCAAUGCUACGa- -3'
miRNA:   3'- gaaCCCUGCU---UGCa-GUUAUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 199952 0.7 0.992829
Target:  5'- aUUGa-ACGAGCGUgGAUACCACGcCa -3'
miRNA:   3'- gAACccUGCUUGCAgUUAUGGUGCaG- -5'
30249 5' -49.4 NC_006273.1 + 7901 0.7 0.993771
Target:  5'- -gUGGcGGCGGACuGUCAGguauCCGCGUg -3'
miRNA:   3'- gaACC-CUGCUUG-CAGUUau--GGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 67649 0.7 0.993771
Target:  5'- ---cGGGCaGGACGUUA--ACCACGUCa -3'
miRNA:   3'- gaacCCUG-CUUGCAGUuaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 31336 0.69 0.995357
Target:  5'- --aGGaguGACGGACGgcCAGUacGCCACGUCu -3'
miRNA:   3'- gaaCC---CUGCUUGCa-GUUA--UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 83367 0.69 0.996017
Target:  5'- -gUGGGAgGAcccGCGg----GCCACGUCg -3'
miRNA:   3'- gaACCCUgCU---UGCaguuaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 43193 0.69 0.997107
Target:  5'- uCUUGGGGUGuGCcUCGAgauCCACGUCg -3'
miRNA:   3'- -GAACCCUGCuUGcAGUUau-GGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 216434 0.69 0.997107
Target:  5'- gUUGGGuACcu-UGUCAGUGCCGCGa- -3'
miRNA:   3'- gAACCC-UGcuuGCAGUUAUGGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.