miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 5' -49.4 NC_006273.1 + 204889 0.68 0.997551
Target:  5'- --aGGuGACGGagcgccucACGUCAGUAugauguccgauCCGCGUCa -3'
miRNA:   3'- gaaCC-CUGCU--------UGCAGUUAU-----------GGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 98077 0.68 0.997937
Target:  5'- aCUUGcGuGCGAACG-CAGcgcACCACGUCa -3'
miRNA:   3'- -GAAC-CcUGCUUGCaGUUa--UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 226687 0.68 0.997937
Target:  5'- gUUGGGACGGucgACGUUg--GCUGCGUa -3'
miRNA:   3'- gAACCCUGCU---UGCAGuuaUGGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 48356 0.68 0.997937
Target:  5'- ---aGGACGAGaCGUCGAUAUCAauaaaaauacCGUCg -3'
miRNA:   3'- gaacCCUGCUU-GCAGUUAUGGU----------GCAG- -5'
30249 5' -49.4 NC_006273.1 + 32955 0.68 0.998271
Target:  5'- --gGGuGAgGAugGUCuccuCCACGUCg -3'
miRNA:   3'- gaaCC-CUgCUugCAGuuauGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 162195 0.68 0.998557
Target:  5'- --cGGaGGCGGugGUugCGGcGCCGCGUCu -3'
miRNA:   3'- gaaCC-CUGCUugCA--GUUaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 202486 0.68 0.998803
Target:  5'- -gUGGuGACccAGgGUCAGUugCGCGUCa -3'
miRNA:   3'- gaACC-CUGc-UUgCAGUUAugGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 86613 0.68 0.998803
Target:  5'- --cGGGAUGAugGUCAGcuCCuCGUa -3'
miRNA:   3'- gaaCCCUGCUugCAGUUauGGuGCAg -5'
30249 5' -49.4 NC_006273.1 + 30525 0.67 0.999189
Target:  5'- --cGGGcCGAAcccCGUCAGcaccCCGCGUCa -3'
miRNA:   3'- gaaCCCuGCUU---GCAGUUau--GGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 179437 0.67 0.999296
Target:  5'- --cGGGA-GAGCGUuucuagauauagagCAaagcGUACCACGUCu -3'
miRNA:   3'- gaaCCCUgCUUGCA--------------GU----UAUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 139965 0.67 0.999338
Target:  5'- --gGGGACGuGCGUUcGUGCCGgGg- -3'
miRNA:   3'- gaaCCCUGCuUGCAGuUAUGGUgCag -5'
30249 5' -49.4 NC_006273.1 + 53928 0.67 0.999451
Target:  5'- -cUGGcGGCagcaguacacgucGAGCGUCAugaggACCAUGUCg -3'
miRNA:   3'- gaACC-CUG-------------CUUGCAGUua---UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 139681 0.67 0.999463
Target:  5'- -gUGGGACGGGCGcCGucACUcguuCGUCu -3'
miRNA:   3'- gaACCCUGCUUGCaGUuaUGGu---GCAG- -5'
30249 5' -49.4 NC_006273.1 + 142816 0.67 0.999507
Target:  5'- -gUGGGcACGGGCGugcaccgcggucugcUCAcgGCCACGg- -3'
miRNA:   3'- gaACCC-UGCUUGC---------------AGUuaUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 35643 0.67 0.999567
Target:  5'- aCUUGGGAaaGAGCGUaCAGU-CCACa-- -3'
miRNA:   3'- -GAACCCUg-CUUGCA-GUUAuGGUGcag -5'
30249 5' -49.4 NC_006273.1 + 43451 0.67 0.999567
Target:  5'- aCUUGGG-CGc-CGUCA-UGCCGCGa- -3'
miRNA:   3'- -GAACCCuGCuuGCAGUuAUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 215985 0.66 0.999652
Target:  5'- --gGGGAUGAGCa-CGAUGCCGugcuUGUCa -3'
miRNA:   3'- gaaCCCUGCUUGcaGUUAUGGU----GCAG- -5'
30249 5' -49.4 NC_006273.1 + 179498 0.66 0.999652
Target:  5'- gUUGuGGGCGuucacCGUCGuugACCACGUa -3'
miRNA:   3'- gAAC-CCUGCuu---GCAGUua-UGGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 4685 0.66 0.999652
Target:  5'- -aUGGGugGAugGUCcg-ACCGgGa- -3'
miRNA:   3'- gaACCCugCUugCAGuuaUGGUgCag -5'
30249 5' -49.4 NC_006273.1 + 208913 0.66 0.999652
Target:  5'- --aGGGACGAguaGUC---GCCGCGUg -3'
miRNA:   3'- gaaCCCUGCUug-CAGuuaUGGUGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.