Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30249 | 5' | -49.4 | NC_006273.1 | + | 53928 | 0.67 | 0.999451 |
Target: 5'- -cUGGcGGCagcaguacacgucGAGCGUCAugaggACCAUGUCg -3' miRNA: 3'- gaACC-CUG-------------CUUGCAGUua---UGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 139965 | 0.67 | 0.999338 |
Target: 5'- --gGGGACGuGCGUUcGUGCCGgGg- -3' miRNA: 3'- gaaCCCUGCuUGCAGuUAUGGUgCag -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 179437 | 0.67 | 0.999296 |
Target: 5'- --cGGGA-GAGCGUuucuagauauagagCAaagcGUACCACGUCu -3' miRNA: 3'- gaaCCCUgCUUGCA--------------GU----UAUGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 30525 | 0.67 | 0.999189 |
Target: 5'- --cGGGcCGAAcccCGUCAGcaccCCGCGUCa -3' miRNA: 3'- gaaCCCuGCUU---GCAGUUau--GGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 202486 | 0.68 | 0.998803 |
Target: 5'- -gUGGuGACccAGgGUCAGUugCGCGUCa -3' miRNA: 3'- gaACC-CUGc-UUgCAGUUAugGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 86613 | 0.68 | 0.998803 |
Target: 5'- --cGGGAUGAugGUCAGcuCCuCGUa -3' miRNA: 3'- gaaCCCUGCUugCAGUUauGGuGCAg -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 162195 | 0.68 | 0.998557 |
Target: 5'- --cGGaGGCGGugGUugCGGcGCCGCGUCu -3' miRNA: 3'- gaaCC-CUGCUugCA--GUUaUGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 32955 | 0.68 | 0.998271 |
Target: 5'- --gGGuGAgGAugGUCuccuCCACGUCg -3' miRNA: 3'- gaaCC-CUgCUugCAGuuauGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 98077 | 0.68 | 0.997937 |
Target: 5'- aCUUGcGuGCGAACG-CAGcgcACCACGUCa -3' miRNA: 3'- -GAAC-CcUGCUUGCaGUUa--UGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 226687 | 0.68 | 0.997937 |
Target: 5'- gUUGGGACGGucgACGUUg--GCUGCGUa -3' miRNA: 3'- gAACCCUGCU---UGCAGuuaUGGUGCAg -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 48356 | 0.68 | 0.997937 |
Target: 5'- ---aGGACGAGaCGUCGAUAUCAauaaaaauacCGUCg -3' miRNA: 3'- gaacCCUGCUU-GCAGUUAUGGU----------GCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 204889 | 0.68 | 0.997551 |
Target: 5'- --aGGuGACGGagcgccucACGUCAGUAugauguccgauCCGCGUCa -3' miRNA: 3'- gaaCC-CUGCU--------UGCAGUUAU-----------GGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 216434 | 0.69 | 0.997107 |
Target: 5'- gUUGGGuACcu-UGUCAGUGCCGCGa- -3' miRNA: 3'- gAACCC-UGcuuGCAGUUAUGGUGCag -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 43193 | 0.69 | 0.997107 |
Target: 5'- uCUUGGGGUGuGCcUCGAgauCCACGUCg -3' miRNA: 3'- -GAACCCUGCuUGcAGUUau-GGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 83367 | 0.69 | 0.996017 |
Target: 5'- -gUGGGAgGAcccGCGg----GCCACGUCg -3' miRNA: 3'- gaACCCUgCU---UGCaguuaUGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 31336 | 0.69 | 0.995357 |
Target: 5'- --aGGaguGACGGACGgcCAGUacGCCACGUCu -3' miRNA: 3'- gaaCC---CUGCUUGCa-GUUA--UGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 7901 | 0.7 | 0.993771 |
Target: 5'- -gUGGcGGCGGACuGUCAGguauCCGCGUg -3' miRNA: 3'- gaACC-CUGCUUG-CAGUUau--GGUGCAg -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 67649 | 0.7 | 0.993771 |
Target: 5'- ---cGGGCaGGACGUUA--ACCACGUCa -3' miRNA: 3'- gaacCCUG-CUUGCAGUuaUGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 199952 | 0.7 | 0.992829 |
Target: 5'- aUUGa-ACGAGCGUgGAUACCACGcCa -3' miRNA: 3'- gAACccUGCUUGCAgUUAUGGUGCaG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 148753 | 0.7 | 0.991776 |
Target: 5'- --aGGGACGAcauGCGccCAAUGCUACGa- -3' miRNA: 3'- gaaCCCUGCU---UGCa-GUUAUGGUGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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