Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30249 | 5' | -49.4 | NC_006273.1 | + | 213051 | 0.7 | 0.991438 |
Target: 5'- -aUGGGACcGACGUCGgagucgcggcGUucguuggcgccgcuGCCGCGUCg -3' miRNA: 3'- gaACCCUGcUUGCAGU----------UA--------------UGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 210232 | 0.7 | 0.990605 |
Target: 5'- -gUGGcGAUGGACGUCAAccgACCGCa-- -3' miRNA: 3'- gaACC-CUGCUUGCAGUUa--UGGUGcag -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 207949 | 0.7 | 0.989307 |
Target: 5'- --aGaGGAgGccuacguagcccAugGUCAAUACCACGUCg -3' miRNA: 3'- gaaC-CCUgC------------UugCAGUUAUGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 46880 | 0.71 | 0.98039 |
Target: 5'- -gUGGGACuuGGACGUUggaaauaAAUGCgGCGUCg -3' miRNA: 3'- gaACCCUG--CUUGCAG-------UUAUGgUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 91749 | 0.72 | 0.978366 |
Target: 5'- --cGGGACGGcuuuGCGUCAccGCCaacuaACGUCg -3' miRNA: 3'- gaaCCCUGCU----UGCAGUuaUGG-----UGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 13825 | 0.72 | 0.975939 |
Target: 5'- -aUGGcGACGGACGUCGggACCgACGg- -3' miRNA: 3'- gaACC-CUGCUUGCAGUuaUGG-UGCag -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 196400 | 0.72 | 0.973319 |
Target: 5'- cCUUGGuGAUGAGCGguugCAGcACCACGg- -3' miRNA: 3'- -GAACC-CUGCUUGCa---GUUaUGGUGCag -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 190151 | 0.72 | 0.970498 |
Target: 5'- --cGGGACGc-CGUCGAUgaccguauuggACCAUGUCg -3' miRNA: 3'- gaaCCCUGCuuGCAGUUA-----------UGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 67496 | 0.76 | 0.862628 |
Target: 5'- gUUGGcGGCGAugGUCAuguucucccaggACCACGUCc -3' miRNA: 3'- gAACC-CUGCUugCAGUua----------UGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 198174 | 0.77 | 0.841988 |
Target: 5'- -cUGGGcACGcGCGUCG--GCCGCGUCg -3' miRNA: 3'- gaACCC-UGCuUGCAGUuaUGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 213639 | 0.81 | 0.629833 |
Target: 5'- --aGGGAuCGGGCGUCcacaGGUACCGCGUCu -3' miRNA: 3'- gaaCCCU-GCUUGCAG----UUAUGGUGCAG- -5' |
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30249 | 5' | -49.4 | NC_006273.1 | + | 230365 | 1.11 | 0.014931 |
Target: 5'- gCUUGGGACGAACGUCAAUACCACGUCa -3' miRNA: 3'- -GAACCCUGCUUGCAGUUAUGGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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