miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 5' -49.4 NC_006273.1 + 2157 0.66 0.999781
Target:  5'- --cGGGGCGGACG-CGAcgGCgGCGg- -3'
miRNA:   3'- gaaCCCUGCUUGCaGUUa-UGgUGCag -5'
30249 5' -49.4 NC_006273.1 + 4685 0.66 0.999652
Target:  5'- -aUGGGugGAugGUCcg-ACCGgGa- -3'
miRNA:   3'- gaACCCugCUugCAGuuaUGGUgCag -5'
30249 5' -49.4 NC_006273.1 + 7901 0.7 0.993771
Target:  5'- -gUGGcGGCGGACuGUCAGguauCCGCGUg -3'
miRNA:   3'- gaACC-CUGCUUG-CAGUUau--GGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 12881 0.66 0.999723
Target:  5'- --cGuGGACGAcgccgaACGUCuggaAGUGCCGgGUCg -3'
miRNA:   3'- gaaC-CCUGCU------UGCAG----UUAUGGUgCAG- -5'
30249 5' -49.4 NC_006273.1 + 13825 0.72 0.975939
Target:  5'- -aUGGcGACGGACGUCGggACCgACGg- -3'
miRNA:   3'- gaACC-CUGCUUGCAGUuaUGG-UGCag -5'
30249 5' -49.4 NC_006273.1 + 30525 0.67 0.999189
Target:  5'- --cGGGcCGAAcccCGUCAGcaccCCGCGUCa -3'
miRNA:   3'- gaaCCCuGCUU---GCAGUUau--GGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 31336 0.69 0.995357
Target:  5'- --aGGaguGACGGACGgcCAGUacGCCACGUCu -3'
miRNA:   3'- gaaCC---CUGCUUGCa-GUUA--UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 32955 0.68 0.998271
Target:  5'- --gGGuGAgGAugGUCuccuCCACGUCg -3'
miRNA:   3'- gaaCC-CUgCUugCAGuuauGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 35643 0.67 0.999567
Target:  5'- aCUUGGGAaaGAGCGUaCAGU-CCACa-- -3'
miRNA:   3'- -GAACCCUg-CUUGCA-GUUAuGGUGcag -5'
30249 5' -49.4 NC_006273.1 + 43193 0.69 0.997107
Target:  5'- uCUUGGGGUGuGCcUCGAgauCCACGUCg -3'
miRNA:   3'- -GAACCCUGCuUGcAGUUau-GGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 43451 0.67 0.999567
Target:  5'- aCUUGGG-CGc-CGUCA-UGCCGCGa- -3'
miRNA:   3'- -GAACCCuGCuuGCAGUuAUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 46880 0.71 0.98039
Target:  5'- -gUGGGACuuGGACGUUggaaauaAAUGCgGCGUCg -3'
miRNA:   3'- gaACCCUG--CUUGCAG-------UUAUGgUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 48356 0.68 0.997937
Target:  5'- ---aGGACGAGaCGUCGAUAUCAauaaaaauacCGUCg -3'
miRNA:   3'- gaacCCUGCUU-GCAGUUAUGGU----------GCAG- -5'
30249 5' -49.4 NC_006273.1 + 53928 0.67 0.999451
Target:  5'- -cUGGcGGCagcaguacacgucGAGCGUCAugaggACCAUGUCg -3'
miRNA:   3'- gaACC-CUG-------------CUUGCAGUua---UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 67496 0.76 0.862628
Target:  5'- gUUGGcGGCGAugGUCAuguucucccaggACCACGUCc -3'
miRNA:   3'- gAACC-CUGCUugCAGUua----------UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 67649 0.7 0.993771
Target:  5'- ---cGGGCaGGACGUUA--ACCACGUCa -3'
miRNA:   3'- gaacCCUG-CUUGCAGUuaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 83367 0.69 0.996017
Target:  5'- -gUGGGAgGAcccGCGg----GCCACGUCg -3'
miRNA:   3'- gaACCCUgCU---UGCaguuaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 86613 0.68 0.998803
Target:  5'- --cGGGAUGAugGUCAGcuCCuCGUa -3'
miRNA:   3'- gaaCCCUGCUugCAGUUauGGuGCAg -5'
30249 5' -49.4 NC_006273.1 + 91749 0.72 0.978366
Target:  5'- --cGGGACGGcuuuGCGUCAccGCCaacuaACGUCg -3'
miRNA:   3'- gaaCCCUGCU----UGCAGUuaUGG-----UGCAG- -5'
30249 5' -49.4 NC_006273.1 + 98077 0.68 0.997937
Target:  5'- aCUUGcGuGCGAACG-CAGcgcACCACGUCa -3'
miRNA:   3'- -GAAC-CcUGCUUGCaGUUa--UGGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.