miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 5' -49.4 NC_006273.1 + 231163 0.66 0.999723
Target:  5'- aCUUGGGGCGGugGgucCGA-GCUGCGg- -3'
miRNA:   3'- -GAACCCUGCUugCa--GUUaUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 230365 1.11 0.014931
Target:  5'- gCUUGGGACGAACGUCAAUACCACGUCa -3'
miRNA:   3'- -GAACCCUGCUUGCAGUUAUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 226687 0.68 0.997937
Target:  5'- gUUGGGACGGucgACGUUg--GCUGCGUa -3'
miRNA:   3'- gAACCCUGCU---UGCAGuuaUGGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 216434 0.69 0.997107
Target:  5'- gUUGGGuACcu-UGUCAGUGCCGCGa- -3'
miRNA:   3'- gAACCC-UGcuuGCAGUUAUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 215985 0.66 0.999652
Target:  5'- --gGGGAUGAGCa-CGAUGCCGugcuUGUCa -3'
miRNA:   3'- gaaCCCUGCUUGcaGUUAUGGU----GCAG- -5'
30249 5' -49.4 NC_006273.1 + 213639 0.81 0.629833
Target:  5'- --aGGGAuCGGGCGUCcacaGGUACCGCGUCu -3'
miRNA:   3'- gaaCCCU-GCUUGCAG----UUAUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 213051 0.7 0.991438
Target:  5'- -aUGGGACcGACGUCGgagucgcggcGUucguuggcgccgcuGCCGCGUCg -3'
miRNA:   3'- gaACCCUGcUUGCAGU----------UA--------------UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 210232 0.7 0.990605
Target:  5'- -gUGGcGAUGGACGUCAAccgACCGCa-- -3'
miRNA:   3'- gaACC-CUGCUUGCAGUUa--UGGUGcag -5'
30249 5' -49.4 NC_006273.1 + 208913 0.66 0.999652
Target:  5'- --aGGGACGAguaGUC---GCCGCGUg -3'
miRNA:   3'- gaaCCCUGCUug-CAGuuaUGGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 208177 0.66 0.999781
Target:  5'- --cGGGACGAaagacgACGUCAGgggauUCACGg- -3'
miRNA:   3'- gaaCCCUGCU------UGCAGUUau---GGUGCag -5'
30249 5' -49.4 NC_006273.1 + 207949 0.7 0.989307
Target:  5'- --aGaGGAgGccuacguagcccAugGUCAAUACCACGUCg -3'
miRNA:   3'- gaaC-CCUgC------------UugCAGUUAUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 204889 0.68 0.997551
Target:  5'- --aGGuGACGGagcgccucACGUCAGUAugauguccgauCCGCGUCa -3'
miRNA:   3'- gaaCC-CUGCU--------UGCAGUUAU-----------GGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 202937 0.66 0.999828
Target:  5'- --aGaGGACGAGCGUCcacacACCGCuuugGUCg -3'
miRNA:   3'- gaaC-CCUGCUUGCAGuua--UGGUG----CAG- -5'
30249 5' -49.4 NC_006273.1 + 202486 0.68 0.998803
Target:  5'- -gUGGuGACccAGgGUCAGUugCGCGUCa -3'
miRNA:   3'- gaACC-CUGc-UUgCAGUUAugGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 199952 0.7 0.992829
Target:  5'- aUUGa-ACGAGCGUgGAUACCACGcCa -3'
miRNA:   3'- gAACccUGCUUGCAgUUAUGGUGCaG- -5'
30249 5' -49.4 NC_006273.1 + 198174 0.77 0.841988
Target:  5'- -cUGGGcACGcGCGUCG--GCCGCGUCg -3'
miRNA:   3'- gaACCC-UGCuUGCAGUuaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 197050 0.66 0.999781
Target:  5'- --cGGGGCGGACG-CGAcgGCgGCGg- -3'
miRNA:   3'- gaaCCCUGCUUGCaGUUa-UGgUGCag -5'
30249 5' -49.4 NC_006273.1 + 196876 0.66 0.999781
Target:  5'- --gGGGACG-ACGUCGccGCCAgCGg- -3'
miRNA:   3'- gaaCCCUGCuUGCAGUuaUGGU-GCag -5'
30249 5' -49.4 NC_006273.1 + 196400 0.72 0.973319
Target:  5'- cCUUGGuGAUGAGCGguugCAGcACCACGg- -3'
miRNA:   3'- -GAACC-CUGCUUGCa---GUUaUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 193230 0.66 0.999723
Target:  5'- -cUGGcGGCGGcgGCGUUAAUGCUGcCGUUg -3'
miRNA:   3'- gaACC-CUGCU--UGCAGUUAUGGU-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.