miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30249 5' -49.4 NC_006273.1 + 31336 0.69 0.995357
Target:  5'- --aGGaguGACGGACGgcCAGUacGCCACGUCu -3'
miRNA:   3'- gaaCC---CUGCUUGCa-GUUA--UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 216434 0.69 0.997107
Target:  5'- gUUGGGuACcu-UGUCAGUGCCGCGa- -3'
miRNA:   3'- gAACCC-UGcuuGCAGUUAUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 43193 0.69 0.997107
Target:  5'- uCUUGGGGUGuGCcUCGAgauCCACGUCg -3'
miRNA:   3'- -GAACCCUGCuUGcAGUUau-GGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 204889 0.68 0.997551
Target:  5'- --aGGuGACGGagcgccucACGUCAGUAugauguccgauCCGCGUCa -3'
miRNA:   3'- gaaCC-CUGCU--------UGCAGUUAU-----------GGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 226687 0.68 0.997937
Target:  5'- gUUGGGACGGucgACGUUg--GCUGCGUa -3'
miRNA:   3'- gAACCCUGCU---UGCAGuuaUGGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 48356 0.68 0.997937
Target:  5'- ---aGGACGAGaCGUCGAUAUCAauaaaaauacCGUCg -3'
miRNA:   3'- gaacCCUGCUU-GCAGUUAUGGU----------GCAG- -5'
30249 5' -49.4 NC_006273.1 + 32955 0.68 0.998271
Target:  5'- --gGGuGAgGAugGUCuccuCCACGUCg -3'
miRNA:   3'- gaaCC-CUgCUugCAGuuauGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 148753 0.7 0.991776
Target:  5'- --aGGGACGAcauGCGccCAAUGCUACGa- -3'
miRNA:   3'- gaaCCCUGCU---UGCa-GUUAUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 7901 0.7 0.993771
Target:  5'- -gUGGcGGCGGACuGUCAGguauCCGCGUg -3'
miRNA:   3'- gaACC-CUGCUUG-CAGUUau--GGUGCAg -5'
30249 5' -49.4 NC_006273.1 + 67649 0.7 0.993771
Target:  5'- ---cGGGCaGGACGUUA--ACCACGUCa -3'
miRNA:   3'- gaacCCUG-CUUGCAGUuaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 83367 0.69 0.996017
Target:  5'- -gUGGGAgGAcccGCGg----GCCACGUCg -3'
miRNA:   3'- gaACCCUgCU---UGCaguuaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 98077 0.68 0.997937
Target:  5'- aCUUGcGuGCGAACG-CAGcgcACCACGUCa -3'
miRNA:   3'- -GAAC-CcUGCUUGCaGUUa--UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 213051 0.7 0.991438
Target:  5'- -aUGGGACcGACGUCGgagucgcggcGUucguuggcgccgcuGCCGCGUCg -3'
miRNA:   3'- gaACCCUGcUUGCAGU----------UA--------------UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 210232 0.7 0.990605
Target:  5'- -gUGGcGAUGGACGUCAAccgACCGCa-- -3'
miRNA:   3'- gaACC-CUGCUUGCAGUUa--UGGUGcag -5'
30249 5' -49.4 NC_006273.1 + 46880 0.71 0.98039
Target:  5'- -gUGGGACuuGGACGUUggaaauaAAUGCgGCGUCg -3'
miRNA:   3'- gaACCCUG--CUUGCAG-------UUAUGgUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 13825 0.72 0.975939
Target:  5'- -aUGGcGACGGACGUCGggACCgACGg- -3'
miRNA:   3'- gaACC-CUGCUUGCAGUuaUGG-UGCag -5'
30249 5' -49.4 NC_006273.1 + 196400 0.72 0.973319
Target:  5'- cCUUGGuGAUGAGCGguugCAGcACCACGg- -3'
miRNA:   3'- -GAACC-CUGCUUGCa---GUUaUGGUGCag -5'
30249 5' -49.4 NC_006273.1 + 67496 0.76 0.862628
Target:  5'- gUUGGcGGCGAugGUCAuguucucccaggACCACGUCc -3'
miRNA:   3'- gAACC-CUGCUugCAGUua----------UGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 198174 0.77 0.841988
Target:  5'- -cUGGGcACGcGCGUCG--GCCGCGUCg -3'
miRNA:   3'- gaACCC-UGCuUGCAGUuaUGGUGCAG- -5'
30249 5' -49.4 NC_006273.1 + 202937 0.66 0.999828
Target:  5'- --aGaGGACGAGCGUCcacacACCGCuuugGUCg -3'
miRNA:   3'- gaaC-CCUGCUUGCAGuua--UGGUG----CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.