miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30250 3' -53.1 NC_006273.1 + 230856 0.66 0.984278
Target:  5'- gUCCUGGGgaacgGGUcgGCgGCCgGUCGGCUu -3'
miRNA:   3'- aAGGACUCa----UCG--UGgUGGgUAGUUGA- -5'
30250 3' -53.1 NC_006273.1 + 113357 0.66 0.982357
Target:  5'- aUCCUGGuGUcgcAGUACaCGCCCGacUCGACg -3'
miRNA:   3'- aAGGACU-CA---UCGUG-GUGGGU--AGUUGa -5'
30250 3' -53.1 NC_006273.1 + 26583 0.66 0.982357
Target:  5'- -aCCUGu---GCGCCacagcGCCCAUCGGCg -3'
miRNA:   3'- aaGGACucauCGUGG-----UGGGUAGUUGa -5'
30250 3' -53.1 NC_006273.1 + 92757 0.66 0.982357
Target:  5'- uUUCCUG-GUcaacgAGCGCCAUCUgguGUCGGCa -3'
miRNA:   3'- -AAGGACuCA-----UCGUGGUGGG---UAGUUGa -5'
30250 3' -53.1 NC_006273.1 + 89490 0.66 0.980266
Target:  5'- -gCCUGcGUGGCgcccGCCACCuCGUCGcgGCUg -3'
miRNA:   3'- aaGGACuCAUCG----UGGUGG-GUAGU--UGA- -5'
30250 3' -53.1 NC_006273.1 + 82975 0.67 0.977994
Target:  5'- gUCgUGAGUAGCAgCGuCCUggCGACUc -3'
miRNA:   3'- aAGgACUCAUCGUgGU-GGGuaGUUGA- -5'
30250 3' -53.1 NC_006273.1 + 190269 0.67 0.977994
Target:  5'- --gCUGcAGUAGCGa-ACCCAUCGGCa -3'
miRNA:   3'- aagGAC-UCAUCGUggUGGGUAGUUGa -5'
30250 3' -53.1 NC_006273.1 + 114340 0.67 0.971193
Target:  5'- -aCCUGGGaccggcacgacgagGGUGCCGCCCAgggCGACg -3'
miRNA:   3'- aaGGACUCa-------------UCGUGGUGGGUa--GUUGa -5'
30250 3' -53.1 NC_006273.1 + 199055 0.67 0.970026
Target:  5'- -gCgUGGGgcUGGCGCUGCUCAUCGACg -3'
miRNA:   3'- aaGgACUC--AUCGUGGUGGGUAGUUGa -5'
30250 3' -53.1 NC_006273.1 + 191306 0.68 0.960182
Target:  5'- uUUCCacgaGAGUAGUACCguguacACCuCGUCGGCUa -3'
miRNA:   3'- -AAGGa---CUCAUCGUGG------UGG-GUAGUUGA- -5'
30250 3' -53.1 NC_006273.1 + 111870 0.68 0.960182
Target:  5'- gUCCgUGcGGUGGCacGCCACCCA-CAGCc -3'
miRNA:   3'- aAGG-AC-UCAUCG--UGGUGGGUaGUUGa -5'
30250 3' -53.1 NC_006273.1 + 227086 0.68 0.943877
Target:  5'- gUCCUGAGcaacUGGUuaucACCGCCCA-CGGCg -3'
miRNA:   3'- aAGGACUC----AUCG----UGGUGGGUaGUUGa -5'
30250 3' -53.1 NC_006273.1 + 65353 0.71 0.864347
Target:  5'- cUCCUGGcGUGGCGCCcagcauuCCCGUCuACg -3'
miRNA:   3'- aAGGACU-CAUCGUGGu------GGGUAGuUGa -5'
30250 3' -53.1 NC_006273.1 + 196020 0.73 0.75951
Target:  5'- gUCCUcgccGGGUAGCGCCGCCuCGUCGu-- -3'
miRNA:   3'- aAGGA----CUCAUCGUGGUGG-GUAGUuga -5'
30250 3' -53.1 NC_006273.1 + 232327 1.06 0.010292
Target:  5'- gUUCCUGAGUAGCACCACCCAUCAACUg -3'
miRNA:   3'- -AAGGACUCAUCGUGGUGGGUAGUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.