miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30250 5' -59.9 NC_006273.1 + 56279 0.66 0.835049
Target:  5'- -uGGUCUGCugGGGCGGguaCGGCCgc-GGGu -3'
miRNA:   3'- uuUCAGACG--CCCGCC---GUCGGgaaCCC- -5'
30250 5' -59.9 NC_006273.1 + 187185 0.66 0.827037
Target:  5'- --cGUgUGUGGGC--CGGCCCUcGGGg -3'
miRNA:   3'- uuuCAgACGCCCGccGUCGGGAaCCC- -5'
30250 5' -59.9 NC_006273.1 + 67984 0.66 0.827037
Target:  5'- gGAAGUCUGUcuGGGCgacgcucugcccGGCGGCgUCaUGGGu -3'
miRNA:   3'- -UUUCAGACG--CCCG------------CCGUCG-GGaACCC- -5'
30250 5' -59.9 NC_006273.1 + 114092 0.66 0.827037
Target:  5'- ------aGCGGGCGGCGGUgg-UGGGu -3'
miRNA:   3'- uuucagaCGCCCGCCGUCGggaACCC- -5'
30250 5' -59.9 NC_006273.1 + 145617 0.66 0.802054
Target:  5'- -cGGUCU--GGGCGGCGGUCgUgguggUGGGg -3'
miRNA:   3'- uuUCAGAcgCCCGCCGUCGGgA-----ACCC- -5'
30250 5' -59.9 NC_006273.1 + 22133 0.66 0.802054
Target:  5'- aGAAGccUCUGCGguagcGGCGGCGGCCgUcucUGaGGa -3'
miRNA:   3'- -UUUC--AGACGC-----CCGCCGUCGGgA---AC-CC- -5'
30250 5' -59.9 NC_006273.1 + 110221 0.66 0.802054
Target:  5'- uAAGagUGCGGccugGCGGUcuagGGCCCgUGGGa -3'
miRNA:   3'- uUUCagACGCC----CGCCG----UCGGGaACCC- -5'
30250 5' -59.9 NC_006273.1 + 16887 0.66 0.793434
Target:  5'- -cGGUCUGC-GGCGcGCGGCCaggcUGGa -3'
miRNA:   3'- uuUCAGACGcCCGC-CGUCGGga--ACCc -5'
30250 5' -59.9 NC_006273.1 + 6481 0.67 0.78468
Target:  5'- -cAGUgUGCGGGCuccGGCuGCUCgcagUUGGGc -3'
miRNA:   3'- uuUCAgACGCCCG---CCGuCGGG----AACCC- -5'
30250 5' -59.9 NC_006273.1 + 48571 0.67 0.7758
Target:  5'- cGGGGUgaG-GGGCGGCAuGCCgUUGGcGg -3'
miRNA:   3'- -UUUCAgaCgCCCGCCGU-CGGgAACC-C- -5'
30250 5' -59.9 NC_006273.1 + 28596 0.67 0.748484
Target:  5'- uAAG-CgagGCGGuguGCGGCAGCuCCUcUGGGa -3'
miRNA:   3'- uUUCaGa--CGCC---CGCCGUCG-GGA-ACCC- -5'
30250 5' -59.9 NC_006273.1 + 186061 0.67 0.738244
Target:  5'- --cGUCcgcGCGGGCGGCAGCauccagaCCaUGGa -3'
miRNA:   3'- uuuCAGa--CGCCCGCCGUCG-------GGaACCc -5'
30250 5' -59.9 NC_006273.1 + 193541 0.68 0.72979
Target:  5'- cAGAGUUUGUGGuGCacGGCguucaaggaAGCCCUcUGGGa -3'
miRNA:   3'- -UUUCAGACGCC-CG--CCG---------UCGGGA-ACCC- -5'
30250 5' -59.9 NC_006273.1 + 30160 0.68 0.701188
Target:  5'- cGAGUCaGUGGGCG--AGCCCggGGGc -3'
miRNA:   3'- uUUCAGaCGCCCGCcgUCGGGaaCCC- -5'
30250 5' -59.9 NC_006273.1 + 145554 0.68 0.691536
Target:  5'- cGGGGUUc-CGGGCGGCGGUgCUggcgGGGg -3'
miRNA:   3'- -UUUCAGacGCCCGCCGUCGgGAa---CCC- -5'
30250 5' -59.9 NC_006273.1 + 188950 0.69 0.66234
Target:  5'- uGGGUUUcGUGGGCGGCGGUguuuUCUUGGu -3'
miRNA:   3'- uUUCAGA-CGCCCGCCGUCG----GGAACCc -5'
30250 5' -59.9 NC_006273.1 + 164914 0.69 0.66234
Target:  5'- --cGUCUGCuucagcucGGGCGGCAGUCCg---- -3'
miRNA:   3'- uuuCAGACG--------CCCGCCGUCGGGaaccc -5'
30250 5' -59.9 NC_006273.1 + 105933 0.69 0.632942
Target:  5'- --uGUCggggGUGGGCGGCAcgaucaucuGUCCUaGGGg -3'
miRNA:   3'- uuuCAGa---CGCCCGCCGU---------CGGGAaCCC- -5'
30250 5' -59.9 NC_006273.1 + 180 0.7 0.593765
Target:  5'- --uGUCUGUuugaguccccagGGGaCGGCAGCgcggguCCUUGGGg -3'
miRNA:   3'- uuuCAGACG------------CCC-GCCGUCG------GGAACCC- -5'
30250 5' -59.9 NC_006273.1 + 40118 0.7 0.593765
Target:  5'- --uGUCUGUuugaguccccagGGGaCGGCAGCgcggguCCUUGGGg -3'
miRNA:   3'- uuuCAGACG------------CCC-GCCGUCG------GGAACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.