Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30250 | 5' | -59.9 | NC_006273.1 | + | 235011 | 0.7 | 0.593765 |
Target: 5'- --uGUCUGUuugaguccccagGGGaCGGCAGCgcggguCCUUGGGg -3' miRNA: 3'- uuuCAGACG------------CCC-GCCGUCG------GGAACCC- -5' |
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30250 | 5' | -59.9 | NC_006273.1 | + | 146366 | 0.7 | 0.574306 |
Target: 5'- cAAGUCuggUGCGGGUGGCGGCg---GGGu -3' miRNA: 3'- uUUCAG---ACGCCCGCCGUCGggaaCCC- -5' |
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30250 | 5' | -59.9 | NC_006273.1 | + | 115489 | 0.7 | 0.574306 |
Target: 5'- uGAAGggcGCGGGCGGCcaguacGGCCUcUGGGc -3' miRNA: 3'- -UUUCagaCGCCCGCCG------UCGGGaACCC- -5' |
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30250 | 5' | -59.9 | NC_006273.1 | + | 193756 | 0.71 | 0.507665 |
Target: 5'- --cGUCUGUGGuuGGCAGCCag-GGGc -3' miRNA: 3'- uuuCAGACGCCcgCCGUCGGgaaCCC- -5' |
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30250 | 5' | -59.9 | NC_006273.1 | + | 232370 | 1.08 | 0.002004 |
Target: 5'- aAAAGUCUGCGGGCGGCAGCCCUUGGGg -3' miRNA: 3'- -UUUCAGACGCCCGCCGUCGGGAACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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