miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30251 3' -51.6 NC_006273.1 + 49549 0.66 0.998147
Target:  5'- gGCCGCUGGuaGUCgcgcauAGUGUGgaagUGgUCGCa -3'
miRNA:   3'- -CGGCGAUCc-UAG------UCGCACa---ACaAGCG- -5'
30251 3' -51.6 NC_006273.1 + 58684 0.66 0.997397
Target:  5'- gGCUGCUAuuGGGUCAcagccGCGUGccgcgggUGcgCGCa -3'
miRNA:   3'- -CGGCGAU--CCUAGU-----CGCACa------ACaaGCG- -5'
30251 3' -51.6 NC_006273.1 + 191495 0.66 0.997397
Target:  5'- cGCCGCUuGGAccuUC-GUGcGUUGUcUCGCc -3'
miRNA:   3'- -CGGCGAuCCU---AGuCGCaCAACA-AGCG- -5'
30251 3' -51.6 NC_006273.1 + 167154 0.66 0.996937
Target:  5'- gGCCGCUGGaaGUCGGCGggcggGggCGUg -3'
miRNA:   3'- -CGGCGAUCc-UAGUCGCacaa-CaaGCG- -5'
30251 3' -51.6 NC_006273.1 + 157731 0.66 0.996937
Target:  5'- cGCCGCcgugAGcAUCuGCGUGaUGcagUCGCa -3'
miRNA:   3'- -CGGCGa---UCcUAGuCGCACaACa--AGCG- -5'
30251 3' -51.6 NC_006273.1 + 207590 0.66 0.996239
Target:  5'- uGCUGCUAcuGGGUCuuuucauuuucuuuGGUGUGUucucccuugUGUUCGUc -3'
miRNA:   3'- -CGGCGAU--CCUAG--------------UCGCACA---------ACAAGCG- -5'
30251 3' -51.6 NC_006273.1 + 172583 0.67 0.995135
Target:  5'- gGCCgGCU-GGAUCAGCGccauUUGUgCGUa -3'
miRNA:   3'- -CGG-CGAuCCUAGUCGCac--AACAaGCG- -5'
30251 3' -51.6 NC_006273.1 + 37941 0.67 0.995135
Target:  5'- -aUGUaUGGGGUCAcCGcGUUGUUCGCg -3'
miRNA:   3'- cgGCG-AUCCUAGUcGCaCAACAAGCG- -5'
30251 3' -51.6 NC_006273.1 + 88049 0.67 0.994688
Target:  5'- aUCGCUGGGcGUCGGCGUccagcacgcgUCGCa -3'
miRNA:   3'- cGGCGAUCC-UAGUCGCAcaaca-----AGCG- -5'
30251 3' -51.6 NC_006273.1 + 229025 0.67 0.994372
Target:  5'- gGCCGUUGGGGUaCGGCGUaUUccUCGg -3'
miRNA:   3'- -CGGCGAUCCUA-GUCGCAcAAcaAGCg -5'
30251 3' -51.6 NC_006273.1 + 50042 0.67 0.992555
Target:  5'- aGCCG-UAGGccAUCAGCGUGUcccGUaggUCGUc -3'
miRNA:   3'- -CGGCgAUCC--UAGUCGCACAa--CA---AGCG- -5'
30251 3' -51.6 NC_006273.1 + 168733 0.68 0.991486
Target:  5'- aGCUGC-AGGAUCucuugcaguAGCGguacGUUG-UCGCg -3'
miRNA:   3'- -CGGCGaUCCUAG---------UCGCa---CAACaAGCG- -5'
30251 3' -51.6 NC_006273.1 + 222190 0.68 0.988987
Target:  5'- cGCCGCacGGGcccgUAGCGggcUGUUuGUUCGCg -3'
miRNA:   3'- -CGGCGa-UCCua--GUCGC---ACAA-CAAGCG- -5'
30251 3' -51.6 NC_006273.1 + 85150 0.68 0.988987
Target:  5'- cCCGCUuag--CAGCGUGUUGcgCGUc -3'
miRNA:   3'- cGGCGAuccuaGUCGCACAACaaGCG- -5'
30251 3' -51.6 NC_006273.1 + 48111 0.68 0.987541
Target:  5'- cGCCGCau-GGUCAGCGUGacccucuuUUCGCc -3'
miRNA:   3'- -CGGCGaucCUAGUCGCACaac-----AAGCG- -5'
30251 3' -51.6 NC_006273.1 + 47659 0.68 0.984029
Target:  5'- uGCCGCUgaacgucGGGuuacccaucAUCGGCGUGaUGcUCGUg -3'
miRNA:   3'- -CGGCGA-------UCC---------UAGUCGCACaACaAGCG- -5'
30251 3' -51.6 NC_006273.1 + 151821 0.69 0.982313
Target:  5'- cGCCGCgAGGcgUAGCGcGUgagcaggUCGCg -3'
miRNA:   3'- -CGGCGaUCCuaGUCGCaCAaca----AGCG- -5'
30251 3' -51.6 NC_006273.1 + 131258 0.69 0.982313
Target:  5'- cGCCGCgucGGGucUCGGCGUGcg---CGCg -3'
miRNA:   3'- -CGGCGa--UCCu-AGUCGCACaacaaGCG- -5'
30251 3' -51.6 NC_006273.1 + 102524 0.69 0.974041
Target:  5'- gGCUGCUcucgggaugcgagauGGGGUCcagcAGCGUGUgcaGUUCGg -3'
miRNA:   3'- -CGGCGA---------------UCCUAG----UCGCACAa--CAAGCg -5'
30251 3' -51.6 NC_006273.1 + 189220 0.71 0.95297
Target:  5'- uGCCGCaGGGcgGUCgcuAGCGUGUcgcagcGUUCGCc -3'
miRNA:   3'- -CGGCGaUCC--UAG---UCGCACAa-----CAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.