Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30251 | 3' | -51.6 | NC_006273.1 | + | 233835 | 1.14 | 0.006078 |
Target: 5'- cGCCGCUAGGAUCAGCGUGUUGUUCGCc -3' miRNA: 3'- -CGGCGAUCCUAGUCGCACAACAAGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 49549 | 0.66 | 0.998147 |
Target: 5'- gGCCGCUGGuaGUCgcgcauAGUGUGgaagUGgUCGCa -3' miRNA: 3'- -CGGCGAUCc-UAG------UCGCACa---ACaAGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 191495 | 0.66 | 0.997397 |
Target: 5'- cGCCGCUuGGAccuUC-GUGcGUUGUcUCGCc -3' miRNA: 3'- -CGGCGAuCCU---AGuCGCaCAACA-AGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 88049 | 0.67 | 0.994688 |
Target: 5'- aUCGCUGGGcGUCGGCGUccagcacgcgUCGCa -3' miRNA: 3'- cGGCGAUCC-UAGUCGCAcaaca-----AGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 229025 | 0.67 | 0.994372 |
Target: 5'- gGCCGUUGGGGUaCGGCGUaUUccUCGg -3' miRNA: 3'- -CGGCGAUCCUA-GUCGCAcAAcaAGCg -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 50042 | 0.67 | 0.992555 |
Target: 5'- aGCCG-UAGGccAUCAGCGUGUcccGUaggUCGUc -3' miRNA: 3'- -CGGCgAUCC--UAGUCGCACAa--CA---AGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 222190 | 0.68 | 0.988987 |
Target: 5'- cGCCGCacGGGcccgUAGCGggcUGUUuGUUCGCg -3' miRNA: 3'- -CGGCGa-UCCua--GUCGC---ACAA-CAAGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 48111 | 0.68 | 0.987541 |
Target: 5'- cGCCGCau-GGUCAGCGUGacccucuuUUCGCc -3' miRNA: 3'- -CGGCGaucCUAGUCGCACaac-----AAGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 151821 | 0.69 | 0.982313 |
Target: 5'- cGCCGCgAGGcgUAGCGcGUgagcaggUCGCg -3' miRNA: 3'- -CGGCGaUCCuaGUCGCaCAaca----AGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 131258 | 0.69 | 0.982313 |
Target: 5'- cGCCGCgucGGGucUCGGCGUGcg---CGCg -3' miRNA: 3'- -CGGCGa--UCCu-AGUCGCACaacaaGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 102524 | 0.69 | 0.974041 |
Target: 5'- gGCUGCUcucgggaugcgagauGGGGUCcagcAGCGUGUgcaGUUCGg -3' miRNA: 3'- -CGGCGA---------------UCCUAG----UCGCACAa--CAAGCg -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 22755 | 0.71 | 0.944529 |
Target: 5'- aCCGCUGGGAUgGGUGUuuuUUGUUCu- -3' miRNA: 3'- cGGCGAUCCUAgUCGCAc--AACAAGcg -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 111352 | 0.76 | 0.773614 |
Target: 5'- cGCCGCUGGGuUCAGCGgcgugauccagGUggugGUUgGCg -3' miRNA: 3'- -CGGCGAUCCuAGUCGCa----------CAa---CAAgCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 85150 | 0.68 | 0.988987 |
Target: 5'- cCCGCUuag--CAGCGUGUUGcgCGUc -3' miRNA: 3'- cGGCGAuccuaGUCGCACAACaaGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 47659 | 0.68 | 0.984029 |
Target: 5'- uGCCGCUgaacgucGGGuuacccaucAUCGGCGUGaUGcUCGUg -3' miRNA: 3'- -CGGCGA-------UCC---------UAGUCGCACaACaAGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 197759 | 0.71 | 0.95297 |
Target: 5'- uGCCGCgcGGGUC-GCGUGUUGa---- -3' miRNA: 3'- -CGGCGauCCUAGuCGCACAACaagcg -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 189220 | 0.71 | 0.95297 |
Target: 5'- uGCCGCaGGGcgGUCgcuAGCGUGUcgcagcGUUCGCc -3' miRNA: 3'- -CGGCGaUCC--UAG---UCGCACAa-----CAAGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 143752 | 0.71 | 0.939959 |
Target: 5'- aUUGCUGGGAUCGuuGCG-GUUGU-CGCc -3' miRNA: 3'- cGGCGAUCCUAGU--CGCaCAACAaGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 31664 | 0.75 | 0.792019 |
Target: 5'- aGCUGCgucgucaAGGA-CGGCGUGUUGgaCGCu -3' miRNA: 3'- -CGGCGa------UCCUaGUCGCACAACaaGCG- -5' |
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30251 | 3' | -51.6 | NC_006273.1 | + | 58684 | 0.66 | 0.997397 |
Target: 5'- gGCUGCUAuuGGGUCAcagccGCGUGccgcgggUGcgCGCa -3' miRNA: 3'- -CGGCGAU--CCUAGU-----CGCACa------ACaaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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