miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30251 3' -51.6 NC_006273.1 + 47659 0.68 0.984029
Target:  5'- uGCCGCUgaacgucGGGuuacccaucAUCGGCGUGaUGcUCGUg -3'
miRNA:   3'- -CGGCGA-------UCC---------UAGUCGCACaACaAGCG- -5'
30251 3' -51.6 NC_006273.1 + 197759 0.71 0.95297
Target:  5'- uGCCGCgcGGGUC-GCGUGUUGa---- -3'
miRNA:   3'- -CGGCGauCCUAGuCGCACAACaagcg -5'
30251 3' -51.6 NC_006273.1 + 189220 0.71 0.95297
Target:  5'- uGCCGCaGGGcgGUCgcuAGCGUGUcgcagcGUUCGCc -3'
miRNA:   3'- -CGGCGaUCC--UAG---UCGCACAa-----CAAGCG- -5'
30251 3' -51.6 NC_006273.1 + 143752 0.71 0.939959
Target:  5'- aUUGCUGGGAUCGuuGCG-GUUGU-CGCc -3'
miRNA:   3'- cGGCGAUCCUAGU--CGCaCAACAaGCG- -5'
30251 3' -51.6 NC_006273.1 + 31664 0.75 0.792019
Target:  5'- aGCUGCgucgucaAGGA-CGGCGUGUUGgaCGCu -3'
miRNA:   3'- -CGGCGa------UCCUaGUCGCACAACaaGCG- -5'
30251 3' -51.6 NC_006273.1 + 38942 1.14 0.006078
Target:  5'- cGCCGCUAGGAUCAGCGUGUUGUUCGCc -3'
miRNA:   3'- -CGGCGAUCCUAGUCGCACAACAAGCG- -5'
30251 3' -51.6 NC_006273.1 + 58684 0.66 0.997397
Target:  5'- gGCUGCUAuuGGGUCAcagccGCGUGccgcgggUGcgCGCa -3'
miRNA:   3'- -CGGCGAU--CCUAGU-----CGCACa------ACaaGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.