miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30251 5' -58.8 NC_006273.1 + 94104 0.65 0.91715
Target:  5'- uGGGCGGccGCACcuagggaGCGcGAGCCCcGUGCCg -3'
miRNA:   3'- -UCUGCU--UGUG-------CGC-CUUGGGcCGCGGg -5'
30251 5' -58.8 NC_006273.1 + 184547 0.65 0.916608
Target:  5'- --cCGGACAUGCGGGuuuccagcaaucCUCGGCGUCg -3'
miRNA:   3'- ucuGCUUGUGCGCCUu-----------GGGCCGCGGg -5'
30251 5' -58.8 NC_006273.1 + 100296 0.65 0.916064
Target:  5'- gAGACGGccACGCGCGaGAaggagcacacguagGCCaUGGCGCg- -3'
miRNA:   3'- -UCUGCU--UGUGCGC-CU--------------UGG-GCCGCGgg -5'
30251 5' -58.8 NC_006273.1 + 130849 0.66 0.914419
Target:  5'- cGACGAGCGCGgGucacaagcugucacuGccgcgcGACCCGGcCGCCg -3'
miRNA:   3'- uCUGCUUGUGCgC---------------C------UUGGGCC-GCGGg -5'
30251 5' -58.8 NC_006273.1 + 141855 0.66 0.914419
Target:  5'- aAGACGAGguCGUGGAucugaugaccgacgaGgCCGGCGgCg -3'
miRNA:   3'- -UCUGCUUguGCGCCU---------------UgGGCCGCgGg -5'
30251 5' -58.8 NC_006273.1 + 210776 0.66 0.912755
Target:  5'- -cACGAAgaGCGCGGAggccacaggcACCaggaggagcaccucgGGCGCCCa -3'
miRNA:   3'- ucUGCUUg-UGCGCCU----------UGGg--------------CCGCGGG- -5'
30251 5' -58.8 NC_006273.1 + 76633 0.66 0.912197
Target:  5'- cGACGGcgcACugGCGcGAcccgACCCGGUauuuuGCCa -3'
miRNA:   3'- uCUGCU---UGugCGC-CU----UGGGCCG-----CGGg -5'
30251 5' -58.8 NC_006273.1 + 152899 0.66 0.912197
Target:  5'- cGugGGugGCGCGGuGGCCUccguggucgaaGGCGUugCCa -3'
miRNA:   3'- uCugCUugUGCGCC-UUGGG-----------CCGCG--GG- -5'
30251 5' -58.8 NC_006273.1 + 39357 0.66 0.912197
Target:  5'- uGGACGAcgACGagGCGGcgcuACCCGGCGa-- -3'
miRNA:   3'- -UCUGCU--UGUg-CGCCu---UGGGCCGCggg -5'
30251 5' -58.8 NC_006273.1 + 140721 0.66 0.912197
Target:  5'- uGGugGcGGCG-GCGGGG-CCGGCGCUUg -3'
miRNA:   3'- -UCugC-UUGUgCGCCUUgGGCCGCGGG- -5'
30251 5' -58.8 NC_006273.1 + 153313 0.66 0.912197
Target:  5'- cGGACGGacugGCACGCaGGACaaGGgacagaaGCCCa -3'
miRNA:   3'- -UCUGCU----UGUGCGcCUUGggCCg------CGGG- -5'
30251 5' -58.8 NC_006273.1 + 120646 0.66 0.912197
Target:  5'- cGGCGAAgAUGCGGuaGAUgucgUUGGCGUCCc -3'
miRNA:   3'- uCUGCUUgUGCGCC--UUG----GGCCGCGGG- -5'
30251 5' -58.8 NC_006273.1 + 158655 0.66 0.912197
Target:  5'- cGuuGGugACGCGGAuguugCCGGCGCa- -3'
miRNA:   3'- uCugCUugUGCGCCUug---GGCCGCGgg -5'
30251 5' -58.8 NC_006273.1 + 212867 0.66 0.912197
Target:  5'- gAGAUGAGCAaaauugguggugUGUGGGcgaaACUCGGCGaaaCCg -3'
miRNA:   3'- -UCUGCUUGU------------GCGCCU----UGGGCCGCg--GG- -5'
30251 5' -58.8 NC_006273.1 + 71947 0.66 0.912197
Target:  5'- uGGCGGACAUGCGacuGCUgGGgGgCCa -3'
miRNA:   3'- uCUGCUUGUGCGCcu-UGGgCCgCgGG- -5'
30251 5' -58.8 NC_006273.1 + 67718 0.66 0.906493
Target:  5'- cGACGAACG-GCGGccGACCCcgccguugcGGcCGCCg -3'
miRNA:   3'- uCUGCUUGUgCGCC--UUGGG---------CC-GCGGg -5'
30251 5' -58.8 NC_006273.1 + 204423 0.66 0.906493
Target:  5'- -cGCGAcCACGCuGGGCUCGaaGCCCa -3'
miRNA:   3'- ucUGCUuGUGCGcCUUGGGCcgCGGG- -5'
30251 5' -58.8 NC_006273.1 + 1494 0.66 0.906493
Target:  5'- aGGACGGACuguACcUGGcGCUgGGCGCCg -3'
miRNA:   3'- -UCUGCUUG---UGcGCCuUGGgCCGCGGg -5'
30251 5' -58.8 NC_006273.1 + 190072 0.66 0.906493
Target:  5'- gGGACGAACAC-CG----UCGGCGCCg -3'
miRNA:   3'- -UCUGCUUGUGcGCcuugGGCCGCGGg -5'
30251 5' -58.8 NC_006273.1 + 207202 0.66 0.906493
Target:  5'- uGGugGcGCugGUcuGGAACacgaCGGUGCCg -3'
miRNA:   3'- -UCugCuUGugCG--CCUUGg---GCCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.