miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30252 5' -52 NC_006273.1 + 105407 0.66 0.996305
Target:  5'- -gCCGCCGG--UC-GAGcccguGCAGCAGCAg -3'
miRNA:   3'- gaGGUGGCCuuAGaCUC-----UGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 56247 0.66 0.996305
Target:  5'- aUCCGCgCGGGacGUCgcugaGGGACGGUGGCu -3'
miRNA:   3'- gAGGUG-GCCU--UAGa----CUCUGUCGUUGu -5'
30252 5' -52 NC_006273.1 + 135418 0.66 0.996305
Target:  5'- -aCCugUGuGAUCUG-GGCAGCGGCu -3'
miRNA:   3'- gaGGugGCcUUAGACuCUGUCGUUGu -5'
30252 5' -52 NC_006273.1 + 204632 0.66 0.996305
Target:  5'- -gCCGCCGGcgccguUCUcGGGCAGCGAgGg -3'
miRNA:   3'- gaGGUGGCCuu----AGAcUCUGUCGUUgU- -5'
30252 5' -52 NC_006273.1 + 21532 0.66 0.996305
Target:  5'- -gCCGgCGGGcgCUGgcguuucgaGGACGGCGGCGc -3'
miRNA:   3'- gaGGUgGCCUuaGAC---------UCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 105874 0.66 0.995689
Target:  5'- gUCUACCGGcgaggguGUCcGuuGCAGCAACGc -3'
miRNA:   3'- gAGGUGGCCu------UAGaCucUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 21929 0.66 0.994992
Target:  5'- -gCCGCCGGcAUCggGuAGACGGCGcuaGCGg -3'
miRNA:   3'- gaGGUGGCCuUAGa-C-UCUGUCGU---UGU- -5'
30252 5' -52 NC_006273.1 + 46109 0.66 0.994992
Target:  5'- uUCCugCGGGcagaacccuccGUCUccaacGAcGACGGCAACGg -3'
miRNA:   3'- gAGGugGCCU-----------UAGA-----CU-CUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 99728 0.66 0.993323
Target:  5'- cCUCCACCuGcuuUUUGAGGCGGUcGCGc -3'
miRNA:   3'- -GAGGUGGcCuu-AGACUCUGUCGuUGU- -5'
30252 5' -52 NC_006273.1 + 102101 0.66 0.993323
Target:  5'- -aCCGCCGcuugCgcccGAGACGGCGGCAu -3'
miRNA:   3'- gaGGUGGCcuuaGa---CUCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 136819 0.66 0.993323
Target:  5'- uCUCCGCgaGG--UCUGGGAUGuGCAGCAu -3'
miRNA:   3'- -GAGGUGg-CCuuAGACUCUGU-CGUUGU- -5'
30252 5' -52 NC_006273.1 + 163064 0.66 0.993323
Target:  5'- ---uGCaGGAGUCcGAGGCGGCGGCGa -3'
miRNA:   3'- gaggUGgCCUUAGaCUCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 101912 0.66 0.993038
Target:  5'- uCUCUugCGGGuugcggugcguguagUUGAGACAGCGAa- -3'
miRNA:   3'- -GAGGugGCCUua-------------GACUCUGUCGUUgu -5'
30252 5' -52 NC_006273.1 + 203718 0.67 0.992336
Target:  5'- gCUCUgcaGCUGGug-CUgGAGAUAGCAGCGc -3'
miRNA:   3'- -GAGG---UGGCCuuaGA-CUCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 8072 0.67 0.992336
Target:  5'- aUCCACCuuGGAAg-UG-GACGGCGAUAa -3'
miRNA:   3'- gAGGUGG--CCUUagACuCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 33272 0.67 0.992336
Target:  5'- uUCCAgCGGGGccUUGcGGCGGCAGCGg -3'
miRNA:   3'- gAGGUgGCCUUa-GACuCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 16033 0.67 0.991236
Target:  5'- --gCGCaCGGugguuucgCUGGGACGGCAACGa -3'
miRNA:   3'- gagGUG-GCCuua-----GACUCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 151171 0.67 0.990015
Target:  5'- aUCCACaccacuuAUCUGcuGGGCAGCAACAc -3'
miRNA:   3'- gAGGUGgccu---UAGAC--UCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 134932 0.67 0.990015
Target:  5'- -aCCACCaGGAcggCUGGGGCGaccauuGCAGCAc -3'
miRNA:   3'- gaGGUGG-CCUua-GACUCUGU------CGUUGU- -5'
30252 5' -52 NC_006273.1 + 113732 0.67 0.990015
Target:  5'- --gCGCCGGAGg-UGGcGACGGCGGCGg -3'
miRNA:   3'- gagGUGGCCUUagACU-CUGUCGUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.