miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30252 5' -52 NC_006273.1 + 146483 0.67 0.988664
Target:  5'- uCUUCGCCGGAggCUGuGGcCAGCGc-- -3'
miRNA:   3'- -GAGGUGGCCUuaGACuCU-GUCGUugu -5'
30252 5' -52 NC_006273.1 + 106613 0.67 0.988664
Target:  5'- aUCCACUuguagGGAAcUUUGAG-CGGCGACGg -3'
miRNA:   3'- gAGGUGG-----CCUU-AGACUCuGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 162810 0.67 0.988664
Target:  5'- -gCCGCUGGAcacGUCUGAaGCGGUGGCc -3'
miRNA:   3'- gaGGUGGCCU---UAGACUcUGUCGUUGu -5'
30252 5' -52 NC_006273.1 + 46526 0.67 0.987176
Target:  5'- -gCCACCgcGGAAUCcGAGACuGCcGCGc -3'
miRNA:   3'- gaGGUGG--CCUUAGaCUCUGuCGuUGU- -5'
30252 5' -52 NC_006273.1 + 119718 0.68 0.985542
Target:  5'- aUCCAgCGGAGUCgacacGAGACGGgCAu-- -3'
miRNA:   3'- gAGGUgGCCUUAGa----CUCUGUC-GUugu -5'
30252 5' -52 NC_006273.1 + 1084 0.68 0.985542
Target:  5'- -gCCGCCGGGcgCcccuccGAGuaGCGGCAACAa -3'
miRNA:   3'- gaGGUGGCCUuaGa-----CUC--UGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 10249 0.68 0.985542
Target:  5'- --gCACCGaGAGaCUGAGGCAGCGu-- -3'
miRNA:   3'- gagGUGGC-CUUaGACUCUGUCGUugu -5'
30252 5' -52 NC_006273.1 + 92993 0.68 0.985542
Target:  5'- cCUCC-CCGGAAcuaccgCUGAG-CGGCuGCGg -3'
miRNA:   3'- -GAGGuGGCCUUa-----GACUCuGUCGuUGU- -5'
30252 5' -52 NC_006273.1 + 195977 0.68 0.985542
Target:  5'- -gCCGCCGGGcgCcccuccGAGuaGCGGCAACAa -3'
miRNA:   3'- gaGGUGGCCUuaGa-----CUC--UGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 188785 0.68 0.985542
Target:  5'- gCUCCGucggcgugCGGggUCgGGGACAGgGACAc -3'
miRNA:   3'- -GAGGUg-------GCCuuAGaCUCUGUCgUUGU- -5'
30252 5' -52 NC_006273.1 + 84548 0.68 0.983753
Target:  5'- aCUgaACCGG-AUCgaGAGugAGCAGCAg -3'
miRNA:   3'- -GAggUGGCCuUAGa-CUCugUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 48035 0.68 0.983753
Target:  5'- cCUCCGCCGGAcau---GGCGGUGACGg -3'
miRNA:   3'- -GAGGUGGCCUuagacuCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 192057 0.68 0.982004
Target:  5'- uCUUCAUCGGAGUCUGucugguggcccugauGuacuuuacGCAGCAGCAg -3'
miRNA:   3'- -GAGGUGGCCUUAGACu--------------C--------UGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 112083 0.68 0.981802
Target:  5'- uUCUguuCUGGAcuAUCUGGGACGGCGuCAg -3'
miRNA:   3'- gAGGu--GGCCU--UAGACUCUGUCGUuGU- -5'
30252 5' -52 NC_006273.1 + 71461 0.68 0.979679
Target:  5'- --aCGCCGcGAUC-GAGGCGGCGGCGa -3'
miRNA:   3'- gagGUGGCcUUAGaCUCUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 165916 0.68 0.979679
Target:  5'- -gCCACgGGGGgaaUGAGACAGaCGACu -3'
miRNA:   3'- gaGGUGgCCUUag-ACUCUGUC-GUUGu -5'
30252 5' -52 NC_006273.1 + 151989 0.69 0.969329
Target:  5'- -gCCGCCGGGccGggUGGcGGCGGCAGCAg -3'
miRNA:   3'- gaGGUGGCCU--UagACU-CUGUCGUUGU- -5'
30252 5' -52 NC_006273.1 + 63706 0.69 0.96294
Target:  5'- --gCGCCGGcAGUCUGAGAaacuaucuGCGACAu -3'
miRNA:   3'- gagGUGGCC-UUAGACUCUgu------CGUUGU- -5'
30252 5' -52 NC_006273.1 + 135212 0.69 0.962598
Target:  5'- -gCCAcCCGGAcgugaacGUCgugGAGACaAGCAACAc -3'
miRNA:   3'- gaGGU-GGCCU-------UAGa--CUCUG-UCGUUGU- -5'
30252 5' -52 NC_006273.1 + 162351 0.7 0.954901
Target:  5'- gUCUGCCGGugguggugGAGGCGGCGGCGc -3'
miRNA:   3'- gAGGUGGCCuuaga---CUCUGUCGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.