Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30252 | 5' | -52 | NC_006273.1 | + | 1084 | 0.68 | 0.985542 |
Target: 5'- -gCCGCCGGGcgCcccuccGAGuaGCGGCAACAa -3' miRNA: 3'- gaGGUGGCCUuaGa-----CUC--UGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 4925 | 0.7 | 0.943067 |
Target: 5'- -cCCGCCGGGGcuUCUgGAGaacgccggaGCAGCAGCGa -3' miRNA: 3'- gaGGUGGCCUU--AGA-CUC---------UGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 8072 | 0.67 | 0.992336 |
Target: 5'- aUCCACCuuGGAAg-UG-GACGGCGAUAa -3' miRNA: 3'- gAGGUGG--CCUUagACuCUGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 10249 | 0.68 | 0.985542 |
Target: 5'- --gCACCGaGAGaCUGAGGCAGCGu-- -3' miRNA: 3'- gagGUGGC-CUUaGACUCUGUCGUugu -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 16033 | 0.67 | 0.991236 |
Target: 5'- --gCGCaCGGugguuucgCUGGGACGGCAACGa -3' miRNA: 3'- gagGUG-GCCuua-----GACUCUGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 21532 | 0.66 | 0.996305 |
Target: 5'- -gCCGgCGGGcgCUGgcguuucgaGGACGGCGGCGc -3' miRNA: 3'- gaGGUgGCCUuaGAC---------UCUGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 21929 | 0.66 | 0.994992 |
Target: 5'- -gCCGCCGGcAUCggGuAGACGGCGcuaGCGg -3' miRNA: 3'- gaGGUGGCCuUAGa-C-UCUGUCGU---UGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 33272 | 0.67 | 0.992336 |
Target: 5'- uUCCAgCGGGGccUUGcGGCGGCAGCGg -3' miRNA: 3'- gAGGUgGCCUUa-GACuCUGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 38831 | 0.74 | 0.814759 |
Target: 5'- --gCGCCGG---CUGAGGCAGCAGCGu -3' miRNA: 3'- gagGUGGCCuuaGACUCUGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 39346 | 1.09 | 0.009857 |
Target: 5'- gCUCCACCGGAAUCUGAGACAGCAACAg -3' miRNA: 3'- -GAGGUGGCCUUAGACUCUGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 46109 | 0.66 | 0.994992 |
Target: 5'- uUCCugCGGGcagaacccuccGUCUccaacGAcGACGGCAACGg -3' miRNA: 3'- gAGGugGCCU-----------UAGA-----CU-CUGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 46526 | 0.67 | 0.987176 |
Target: 5'- -gCCACCgcGGAAUCcGAGACuGCcGCGc -3' miRNA: 3'- gaGGUGG--CCUUAGaCUCUGuCGuUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 48035 | 0.68 | 0.983753 |
Target: 5'- cCUCCGCCGGAcau---GGCGGUGACGg -3' miRNA: 3'- -GAGGUGGCCUuagacuCUGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 56116 | 0.72 | 0.902796 |
Target: 5'- -gCCGCCGGAuuucGUCgaaacgggccgcgGAGGCGGCGACc -3' miRNA: 3'- gaGGUGGCCU----UAGa------------CUCUGUCGUUGu -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 56247 | 0.66 | 0.996305 |
Target: 5'- aUCCGCgCGGGacGUCgcugaGGGACGGUGGCu -3' miRNA: 3'- gAGGUG-GCCU--UAGa----CUCUGUCGUUGu -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 63706 | 0.69 | 0.96294 |
Target: 5'- --gCGCCGGcAGUCUGAGAaacuaucuGCGACAu -3' miRNA: 3'- gagGUGGCC-UUAGACUCUgu------CGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 71461 | 0.68 | 0.979679 |
Target: 5'- --aCGCCGcGAUC-GAGGCGGCGGCGa -3' miRNA: 3'- gagGUGGCcUUAGaCUCUGUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 84548 | 0.68 | 0.983753 |
Target: 5'- aCUgaACCGG-AUCgaGAGugAGCAGCAg -3' miRNA: 3'- -GAggUGGCCuUAGa-CUCugUCGUUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 92993 | 0.68 | 0.985542 |
Target: 5'- cCUCC-CCGGAAcuaccgCUGAG-CGGCuGCGg -3' miRNA: 3'- -GAGGuGGCCUUa-----GACUCuGUCGuUGU- -5' |
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30252 | 5' | -52 | NC_006273.1 | + | 99728 | 0.66 | 0.993323 |
Target: 5'- cCUCCACCuGcuuUUUGAGGCGGUcGCGc -3' miRNA: 3'- -GAGGUGGcCuu-AGACUCUGUCGuUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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