miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30253 3' -62.5 NC_006273.1 + 40486 0.66 0.765101
Target:  5'- gGCGUggucgagGcGGCCcgGcuGCUGCCGGACAg- -3'
miRNA:   3'- -CGCGa------C-CCGGuaC--CGGCGGCCUGUgg -5'
30253 3' -62.5 NC_006273.1 + 55446 0.66 0.765101
Target:  5'- aGCGUUuaugagucGGGCgGUGGCCGgC--ACGCCg -3'
miRNA:   3'- -CGCGA--------CCCGgUACCGGCgGccUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 90616 0.66 0.765101
Target:  5'- aGCGa--GGCCAcGGCCGCCGcGuCguGCCu -3'
miRNA:   3'- -CGCgacCCGGUaCCGGCGGC-CuG--UGG- -5'
30253 3' -62.5 NC_006273.1 + 55577 0.66 0.765101
Target:  5'- gGCGCcacaGGGCCAgcaGGUCGC---GCGCCa -3'
miRNA:   3'- -CGCGa---CCCGGUa--CCGGCGgccUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 232982 0.66 0.765101
Target:  5'- cGCGC--GGCCucGGCgG-CGGGCGCCg -3'
miRNA:   3'- -CGCGacCCGGuaCCGgCgGCCUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 187183 0.66 0.765101
Target:  5'- aGCGUgugUGGGCCGgcccucgGGgUGCgGGugGCg -3'
miRNA:   3'- -CGCG---ACCCGGUa------CCgGCGgCCugUGg -5'
30253 3' -62.5 NC_006273.1 + 188147 0.66 0.765101
Target:  5'- -gGC-GGGCCG-GGUCGCCgaguuccgggucGGGCACa -3'
miRNA:   3'- cgCGaCCCGGUaCCGGCGG------------CCUGUGg -5'
30253 3' -62.5 NC_006273.1 + 38089 0.66 0.765101
Target:  5'- cGCGC--GGCCucGGCgG-CGGGCGCCg -3'
miRNA:   3'- -CGCGacCCGGuaCCGgCgGCCUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 171110 0.66 0.764222
Target:  5'- cGCGUaaGGcGCCAUccgcuucGGCCGCCGccgcaACGCCc -3'
miRNA:   3'- -CGCGa-CC-CGGUA-------CCGGCGGCc----UGUGG- -5'
30253 3' -62.5 NC_006273.1 + 174184 0.66 0.764222
Target:  5'- aCGCUGGGCU---GCgucaagaccgucuCGCUGGGCAUCa -3'
miRNA:   3'- cGCGACCCGGuacCG-------------GCGGCCUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 15980 0.66 0.759814
Target:  5'- cGCGCUacgaaacuuuucugcGGGUCAUGGgCGacuuucaGGGCAUCu -3'
miRNA:   3'- -CGCGA---------------CCCGGUACCgGCgg-----CCUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 29064 0.66 0.756271
Target:  5'- aGCccuCUGGGCCccGGUCGCgGGuaguAUGCCu -3'
miRNA:   3'- -CGc--GACCCGGuaCCGGCGgCC----UGUGG- -5'
30253 3' -62.5 NC_006273.1 + 211215 0.66 0.756271
Target:  5'- -aGgUGGGgUA-GGCCGCCGaGACguuaGCCa -3'
miRNA:   3'- cgCgACCCgGUaCCGGCGGC-CUG----UGG- -5'
30253 3' -62.5 NC_006273.1 + 45592 0.66 0.755382
Target:  5'- cGUGCagGcGGCCAUGGCCG-CGGcucuacaacaacaGCAgCa -3'
miRNA:   3'- -CGCGa-C-CCGGUACCGGCgGCC-------------UGUgG- -5'
30253 3' -62.5 NC_006273.1 + 1641 0.66 0.747347
Target:  5'- -gGCUGGG-CGUGGgcaccCCGCgCGcGACGCUg -3'
miRNA:   3'- cgCGACCCgGUACC-----GGCG-GC-CUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 101634 0.66 0.747347
Target:  5'- aGUGCaGcuCCAUGGCCGCCGu-CGCUa -3'
miRNA:   3'- -CGCGaCccGGUACCGGCGGCcuGUGG- -5'
30253 3' -62.5 NC_006273.1 + 196534 0.66 0.747347
Target:  5'- -gGCUGGG-CGUGGgcaccCCGCgCGcGACGCUg -3'
miRNA:   3'- cgCGACCCgGUACC-----GGCG-GC-CUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 83377 0.66 0.747347
Target:  5'- cCGC-GGGCCAcgucgGGCUGCUGc-CGCCg -3'
miRNA:   3'- cGCGaCCCGGUa----CCGGCGGCcuGUGG- -5'
30253 3' -62.5 NC_006273.1 + 153598 0.66 0.747347
Target:  5'- gGCGUgaccGGCgGUgcGGUCGCgGGugGCCg -3'
miRNA:   3'- -CGCGac--CCGgUA--CCGGCGgCCugUGG- -5'
30253 3' -62.5 NC_006273.1 + 72602 0.66 0.747347
Target:  5'- aGCGacaUGcGGCCGcuGCCGCCGc-CACCa -3'
miRNA:   3'- -CGCg--AC-CCGGUacCGGCGGCcuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.